5–11 Jun 2022
McMaster University
America/Toronto timezone
Welcome to the 2022 CAP Congress Program website! / Bienvenue au siteweb du programme du Congrès de l'ACP 2022!

(G*) Novel Accelerated Imaging Method for 1H and 129Xe MRI with Deep Learning

6 Jun 2022, 11:30
15m
MDCL 1102 (McMaster University)

MDCL 1102

McMaster University

Oral Competition (Graduate Student) / Compétition orale (Étudiant(e) du 2e ou 3e cycle) Physics in Medicine and Biology / Physique en médecine et en biologie (DPMB-DPMB) M1-3 Imaging - MRI (DPMB) I Imagerie - IRM (DPMB)

Speaker

Samuel Perron (The University of Western Ontario)

Description

Introduction: Recently, accelerated imaging, using Compressed-Sensing (CS) and fitting to the Stretched-Exponential Model (SEM), has been shown to significantly improve SNR of MRI images without increasing scan duration1: k-space is undersampled according to high acceleration factors (AF) and averaged together using a specific averaging pattern. A density decay curve can then be fitted and reconstructed using the SEM combined with CS.2 Reconstruction artefacts can be minimized or removed using a convolutional neural network.3

Method: 1H MR was performed on a resolution-phantom at the low-field (0.074T) MRI scanner using a home-built RF coil. Using FGRE, 9 2D undersampled k-spaces were acquired for three AFs (7, 10, 14): these were averaged for every unique combination of images without overlap, resulting in 14 k-spaces total (2 combinations for 4 averages, etc.). Nine fully-sampled 2D human lung images were acquired at 3.0 T using inhaled hyperpolarized 129Xe (35%); these were averaged using the previously-described pattern, and retroactively undersampled for 3 Cartesian sampling schemes (FGRE, x-Centric4, & 8-sector FE Sectoral5). The SNR attenuation is assumed to represent a decrease of the resonant isotope density in phantom after diluting it with the non-resonant isotope. For both phantom and lung images, the resulting signal decay (density) curve was fitted using the Abascal method.2 A 3-stage U-Net was developed to generate artefact masks (segmentation), and applied to phantom data to remove artefacts.

Results: The reconstructed human lung images saw 4-5x higher SNR (>21 for all sampling schemes) compared to the original non-averaged images (SNR=6). FE-Sectoral featured less artefacts than FGRE and x-Centric.

Conclusion: In all cases, this technique resulted in 4-5x higher SNR without increasing scan duration; although only a third of a typical 129Xe dose was used, the human lung images still saw large SNR gains. The artefact removal neural network was able to remove reconstruction artefacts from AF=7 phantom images, but suffered at higher AFs. These improvements in SNR permit the use of a smaller xenon dose, significantly reducing scan costs.

References:
1 Perron et al. ISMRM (2021); 2 Abascal et al. IEEE Trans Med Imaging (2018); 3 Lee et al. MRM (2017); 4 Ouriadov et al. MRM (2017); 5 Khrapitchev et al. JMR (2006)

Primary author

Samuel Perron (The University of Western Ontario)

Co-authors

Matthew S. Fox (Lawson Health Research Center) Alexei Ouriadov (The University of Western Ontario)

Presentation materials