BioDynaMo Workshop on Agent-Based Modeling
Friday, 19 November 2021 -
10:00
Monday, 15 November 2021
Tuesday, 16 November 2021
Wednesday, 17 November 2021
Thursday, 18 November 2021
Friday, 19 November 2021
10:00
Introduction
-
Roman Bauer
Introduction
Roman Bauer
10:00 - 10:05
10:05
The BioDynaMo Platform: Current State and Future Developments
-
Lukas Breitwieser
(
CERN, ETH Zurich
)
Fons Rademakers
(
CERN
)
The BioDynaMo Platform: Current State and Future Developments
Lukas Breitwieser
(
CERN, ETH Zurich
)
Fons Rademakers
(
CERN
)
10:05 - 10:20
10:20
From multicellular to tissue biomechanics simulations in cancer using multiscale finite element and agent-based models
-
Vasileios Vavourakis
(
University of Cyprus / UCL
)
From multicellular to tissue biomechanics simulations in cancer using multiscale finite element and agent-based models
Vasileios Vavourakis
(
University of Cyprus / UCL
)
10:20 - 10:40
10:40
Emergence and Macroscopic Behaviour ExtRaction (EMBER): a tool for bifurcation analysis of agent-based models
-
Anne Skeldon
(
University of Surrey
)
Emergence and Macroscopic Behaviour ExtRaction (EMBER): a tool for bifurcation analysis of agent-based models
Anne Skeldon
(
University of Surrey
)
10:40 - 11:00
11:00
Parallelised optimisation with BioDynaMo
-
Ahmad Hesam
(
CERN
)
Parallelised optimisation with BioDynaMo
Ahmad Hesam
(
CERN
)
11:00 - 11:10
11:10
Coffee break
Coffee break
11:10 - 11:30
11:30
Agent-based modelling of radiation-induced lung fibrosis
-
Nicolo Cogno
(
TU Darmstadt / GSI Helmholtz Centre
)
Agent-based modelling of radiation-induced lung fibrosis
Nicolo Cogno
(
TU Darmstadt / GSI Helmholtz Centre
)
11:30 - 11:50
11:50
Agent-based modelling of multi-state biomolecules
-
Melanie Stefan
(
Edinburgh University
)
Agent-based modelling of multi-state biomolecules
Melanie Stefan
(
Edinburgh University
)
11:50 - 12:10
12:10
CryoDynaMo for cryopreservation simulations
-
Jack Jennings
(
Newcastle University
)
CryoDynaMo for cryopreservation simulations
Jack Jennings
(
Newcastle University
)
12:10 - 12:30
12:30
Lunch break
Lunch break
12:30 - 13:30
13:30
Cryopreservation: a Time Travel Machine
-
Ramon Risco
(
University of Seville
)
Cryopreservation: a Time Travel Machine
Ramon Risco
(
University of Seville
)
13:30 - 13:50
13:50
Leveraging Machine Learning for efficient agent-based simulations and application on biomedical cases
-
Taghi Aliyev
(
SCImPULSE Foundation
)
Leveraging Machine Learning for efficient agent-based simulations and application on biomedical cases
Taghi Aliyev
(
SCImPULSE Foundation
)
13:50 - 14:10
14:10
Open discussion on presentations and overlap
Open discussion on presentations and overlap
14:10 - 14:30
14:30
Development and calibration of an agent-based model of tumor growth
-
Ernesto Lima
(
The University of Texas at Austin
)
Development and calibration of an agent-based model of tumor growth
Ernesto Lima
(
The University of Texas at Austin
)
14:30 - 14:50
14:50
Agent-Based Modeling of Financial Markets
-
Philippe Debie
(
WUR
)
Agent-Based Modeling of Financial Markets
Philippe Debie
(
WUR
)
14:50 - 15:10
15:10
Improving the continuum modelling within BioDynaMo
-
Tobias Duswald
Improving the continuum modelling within BioDynaMo
Tobias Duswald
15:10 - 15:20
15:20
Coffee break
Coffee break
15:20 - 15:30
15:30
Agent-based models for socioeconomic simulations
-
Frank Pijpers
(
University of Amsterdam / Statistics Netherlands
)
Agent-based models for socioeconomic simulations
Frank Pijpers
(
University of Amsterdam / Statistics Netherlands
)
15:30 - 15:50
15:50
Modelling of mosquito borne diseases and ML applications to their forecast
-
Flavio Coelho
(
University of Geneva
)
Modelling of mosquito borne diseases and ML applications to their forecast
Flavio Coelho
(
University of Geneva
)
15:50 - 16:10
16:10
Individual-based mathematical model of HIV transmission and its implementation for Malawi
-
Janne Anton Markus Estill
(
University of Geneva
)
Individual-based mathematical model of HIV transmission and its implementation for Malawi
Janne Anton Markus Estill
(
University of Geneva
)
16:10 - 16:30
16:30
Knowledge Transfer and IP in academic and industrial research
-
Han Hubert Dols
(
CERN
)
Knowledge Transfer and IP in academic and industrial research
Han Hubert Dols
(
CERN
)
16:30 - 16:50
16:50
Concluding remarks
-
Roman Bauer
Concluding remarks
Roman Bauer
16:50 - 17:00
17:00
Open discussion on presentations and opportunities
Open discussion on presentations and opportunities
17:00 - 17:30