BioDynaMo workshop
from
Thursday 1 December 2016 (09:30)
to
Friday 2 December 2016 (17:30)
Monday 28 November 2016
Tuesday 29 November 2016
Wednesday 30 November 2016
Thursday 1 December 2016
09:30
Welcome coffee in R2
Welcome coffee in R2
09:30 - 10:00
Room: 513/1-024
10:00
Welcome and Roundtable Introduction
-
Fons Rademakers
(
CERN
)
Welcome and Roundtable Introduction
Fons Rademakers
(
CERN
)
10:00 - 10:05
Room: 513/1-024
10:05
Workshop Agenda and Objectives - Day 1
-
Fons Rademakers
(
CERN
)
Workshop Agenda and Objectives - Day 1
Fons Rademakers
(
CERN
)
10:05 - 10:20
Room: 513/1-024
10:20
Overview of the science, user requirements and competitive landscape
-
Roman Bauer
Marco Manca
(
CERN
)
Overview of the science, user requirements and competitive landscape
Roman Bauer
Marco Manca
(
CERN
)
10:20 - 11:00
Room: 513/1-024
11:00
Coffee break
Coffee break
11:00 - 11:30
Room: 513/1-024
11:30
System overview, architecture and responsibilities - Part 1
-
Lukas Breitwieser
(
openlab
)
System overview, architecture and responsibilities - Part 1
Lukas Breitwieser
(
openlab
)
11:30 - 12:30
Room: 513/1-024
12:30
Lunch
Lunch
12:30 - 14:00
Room: 513/1-024
14:00
Spatial organization: data structures for scalability
-
Vicktor Drobnyy
Spatial organization: data structures for scalability
Vicktor Drobnyy
14:00 - 14:45
Room: 513/1-024
14:45
Data I/O: Data Structures for input, output, communication, etc.
Data I/O: Data Structures for input, output, communication, etc.
14:45 - 15:30
Room: 513/1-024
15:30
Coffee break
Coffee break
15:30 - 16:00
Room: 513/1-024
16:00
Status of the BioDynaMo computational kernel
-
Lukas Breitwieser
(
openlab
)
Status of the BioDynaMo computational kernel
Lukas Breitwieser
(
openlab
)
16:00 - 17:00
Room: 513/1-024
- Status - Architecture - Vectorization/parallelization optimizations - Potential improvements
17:00
Visit to CERN
Visit to CERN
17:00 - 18:30
Room: 513/1-024
19:25
Dinner
Dinner
19:25 - 21:25
Room: 513/1-024
Friday 2 December 2016
09:30
Workshop Agenda and Objectives - Day 2
-
Fons Rademakers
(
CERN
)
Workshop Agenda and Objectives - Day 2
Fons Rademakers
(
CERN
)
09:30 - 09:45
Room: 513/1-024
09:45
Wrap-up/Summary of day 1, integration in overall architecture
-
Fons Rademakers
(
CERN
)
Wrap-up/Summary of day 1, integration in overall architecture
Fons Rademakers
(
CERN
)
09:45 - 11:00
Room: 513/1-024
11:00
Coffee break
Coffee break
11:00 - 11:30
Room: 513/1-024
11:30
Physics engines: general overview, engine selection and system integration
-
Ilya Dmitrenok
Physics engines: general overview, engine selection and system integration
Ilya Dmitrenok
11:30 - 12:00
Room: 513/1-024
12:00
Visualization engines for biology simulation
-
Alexey Trusov
Visualization engines for biology simulation
Alexey Trusov
12:00 - 12:30
Room: 513/1-024
12:30
Lunch
Lunch
12:30 - 13:30
Room: 513/1-024
13:30
Data sharing with Zenodo
-
Lars Holm Nielsen
(
CERN
)
Data sharing with Zenodo
Lars Holm Nielsen
(
CERN
)
13:30 - 14:15
Room: 513/1-024
14:15
Deployment Models: Overview
-
Fons Rademakers
(
CERN
)
Deployment Models: Overview
Fons Rademakers
(
CERN
)
14:15 - 14:30
Room: 513/1-024
14:30
Deployment Models; Single-Node Scenario
Deployment Models; Single-Node Scenario
14:30 - 15:00
Room: 513/1-024
15:00
Coffee break
Coffee break
15:00 - 15:30
Room: 513/1-024
15:30
Deployment Models: Cloud Platform Scenario
-
Alexey Kosterin
Deployment Models: Cloud Platform Scenario
Alexey Kosterin
15:30 - 16:00
Room: 513/1-024
16:00
Deploymeny Models: HPC Scenario
Deploymeny Models: HPC Scenario
16:00 - 16:30
Room: 513/1-024
16:30
Project Management and Governance
-
Alberto Di Meglio
(
CERN
)
Project Management and Governance
Alberto Di Meglio
(
CERN
)
16:30 - 17:00
Room: 513/1-024
17:00
Next steps, conclusions
Next steps, conclusions
17:00 - 17:30
Room: 513/1-024