Name: Dynamics of biological systems: from viruses to populations
Start: 2020-09-23T09:00:00+02:00
End: 2020-09-25T18:00:00+02:00
Location: No location set

Dynamics of biological systems: from viruses to populations

from Wednesday, 23 September 2020 (09:00) to Friday, 25 September 2020 (18:00)

Monday, 21 September 2020
Tuesday, 22 September 2020
Wednesday, 23 September 2020

10:00 Opening remarks
Opening remarks
10:00 - 10:10
10:10 Viruses
Viruses
10:10 - 13:00
Contributions

10:10 Emergence of COVID-19 – ground for its evolutionary success - Janusz Kocik (School for Public Health, Centre of Postgraduate Medical Education Warsaw, Poland)

10:50 SARS-CoV-2 Vaccine Development: Incorporating AI into epitope-based vaccine design - Piotr Skoczylas (Ardigen)

11:40 Modelling disease ecology - Fakhteh Ghanbarnejad (Sharif University of Technology)

12:10 Super-spreading events initiated the exponential growth phase of COVID-19 with R0 higher than initially estimated - Marek Kochańczyk (Institute of Fundamental Technological Research PAS)

12:40 Social distancing in pedestrian dynamics and its effect on disease spreading - Sina Sajjadi (Sharif University of Technology) Alireza Hashemi (Sharif University of Technology) Fakhteh Ghanbarnejad (Sharif University of Technology)
13:00 Lunch break
Lunch break
13:00 - 14:00
14:00 Bacteria
Bacteria
14:00 - 16:55
Contributions

14:00 Drug interactions between translation-inhibiting antibiotics - Tobias Bollenbach (University of Cologne)

14:40 Ribosome traffic jams underlie suppressive drug interactions - Bor Kavčič (IST Austria)

15:00 To make things simpler: classical Powell's ideas for describing bacterial population revisited. - Marcin Rubin (Institute of Physical Chemistry PAS)

15:15 High-throughput screening and selection of electrogenic microbial communities using single chamber microbial fuel cells based on 96-well plate array - Lukasz Szydlowski (Jagiellonian University)

15:35 Eco-evolutionary interactions in polymicrobial infections - Marjon de Vos (RUG)

16:05 Building clone-consistent ecosystem models - Gerrit Ansmann (University of Cologne)

16:25 Genomic epidemiology, sex & evolution of bacterial sugars - Rafał Mostowy
16:55 Coffee Break
Coffee Break
16:55 - 17:00

17:00 Mindfulness for Academics
Mindfulness for Academics
17:00 - 17:30
Thursday, 24 September 2020
10:00 Cells I
Cells I
10:00 - 13:00
Contributions

10:00 Modelling planar polarised cell behaviours in epithelial tissues - Alexander Fletcher (University of Sheffield)

10:40 Epithelial dynamics during mouse neural tube development - Laura Bocanegra-Moreno (IST)

11:00 Active organelle dynamics facilitates precise sensing of fluctuating signals - Felix Jonathan Meigel (Max Planck Institute for the Physics of Complex Systems)

11:40 Cell Fate Clusters in ICM Organoids Arise from Cell Fate Heredity & Division – a Modelling Approach - Tim Liebisch (Goethe University Frankfurt am Main)

12:00 Setting up the epigenome: a collective phenomenon - Steffen Rulands

12:30 Stochasticity and mechanics of stem cell fate in intestinal crypts - Edouard Hannezo (IST Austria)
13:00 Lunch break
Lunch break
13:00 - 14:00
14:00 Cells II
Cells II
14:00 - 15:55
Contributions

14:00 Dynamics of cell migration process - Zenon Rajfur (Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University)

14:40 Chemotaxis impact on a Turing reaction-diffusion system - Camile Fraga Delfino Kunz (Goethe University Frankfurt)

14:55 How cell growth, division, and stochastic gene expression contribute to the protein noise floor - Anna Ochab-Marcinek (Institute of Physical Chemistry, Polish Academy of Sciences)

15:25 The many ends of a never-ending story: Deriving the Drosophila gap gene system by ab-initio optimization - Thomas Sokolowski (Frankfurt Institute for Advanced Studies (FIAS))
15:55 Coffee Break
Coffee Break
15:55 - 16:00

16:00 Social Event
Social Event
16:00 - 17:00
Friday, 25 September 2020
10:00 Populations
Populations
10:00 - 13:00
Contributions

10:00 Intermediate social bonds and the evolution of reproductive cooperation - Szymon Drobniak (University of New South Wales; Jagiellonian University)

10:40 Specialization and plasticity in a primitively social insect - Adolfo Alsina (MPI for the Physics of Complex Systems)

11:00 A part‐dependent account of biological individuality: why holobionts are individuals and ecosystems simultaneously - Javier Suárez (Bielefeld University) Adrian Stencel (Jagiellonian University)

11:40 Pattern formation in a predator-prey model with defense in fearful prey - Purnedu Mishra (University of Warsaw)

12:00 Uncertainties and epidemics spread - Bartlomiej Dybiec (Institute of Theoretical Physics, Jagiellonian University)

12:30 How unicellular yeast form a community for the benefit of long-term survival. - Dominika Wloch-Salamon (Jagiellonian University)
13:00 Lunch break
Lunch break
13:00 - 14:00
14:00 Medical Biology
Medical Biology
14:00 - 16:55
Contributions

14:00 Predictive models of bacterial response and the evolution of resistance to antibiotics - Bartlomiej Waclaw

14:40 Mathematical Investigation of Early Atherosclerosis - Debasmita Mukherjee (Department of Statistics, Sunandan Divatia School of Science,SVKM's NMIMS (Deemed to be) University)

15:00 Challenges in the Boron Neutron Capture Therapy - Michal Silarski (Jagiellonian University)

15:30 Bio-electric phenomena during growth and regeneration - Jan Jedryszek (Jagiellonian University)

15:45 Structural and Functional Genomics of the Human Gut Microbiome - Tomasz Kościółek

16:15 [CANCELLED] Coagulation cascade as a dynamic biological system - Ewa Stępień (Uniwersytet Jagiellonski)
16:55 Closing Remarks
Closing Remarks
16:55 - 17:00

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