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    NA4 Bioinformatics Activity meeting #5

    → Europe/Zurich
    tbd (Swiss National Supercomputing Centre CSCS)

    tbd

    Swiss National Supercomputing Centre CSCS

    Galleria 2 - Via Cantonale CH-6928 Manno(Switzerland) Phone (Switchboard): +41 (91) 610 8211
    Christophe Blanchet (CNRS IBCP), Peter Kunszt (CSCS)
    Description
    Bioinformatics is a major application area for the EGEE project. The bioinformatics sector targets gene and protein sequences analysis. It includes genomics, proteomics and phylogeny. The bioinformatics applications are now established as regular users of the infrastructure. The main goal of the Bioinformatics Activity in EGEE is to build a bioinformatics community around the EGEE platform. There are currently twenty applications having joined the Bioinformatics community on EGEE Grid. We are collaborating with related projects BIOINFOGRID (EU-FP6), SwissBioGrid (National Grid Initiative) and EELA (EU-FP6) to port a broad spectrum of their applications to the EGEE production infrastructure, and with the European Network of Excellence EMBRACE (EU-FP6).
    more information
    • Monday 24 September
      • 14:00 → 17:00
        Porting Applications with GridWay on EGEE

        The aim of the tutorial is to provide a global overview of the process
        of installing, configuring and using GridWay on EGEE. The course will
        describe the development of codes using the C and JAVA bindings of the DRMAA
        OGF standard and its Command Line Interface. The development of codes
        using DRMAA assures compatibility of applications with other management
        systems that implements the standard, such as SGE, Condor, Torque.
        The course includes hands-on exercises.

        more information
    • Tuesday 25 September
      • 09:00 → 12:00
        Porting Applications with GridWay on EGEE (follow-up)
      • 14:00 → 17:00
        EGEE Bioinformatics Internal Meeting

        Status and plans of the EGEE Bioinformatics applications (EGEE partners only).

        Each partner is invited to give during the meeting a report about:
        1) Applications status and bioinformatics accomplishments of your institute last period.
        2) Resolved issues
        3) Outstanding issues
        4) Meeting information
        5) Publications

    • Wednesday 26 September
      • 09:00 → 17:00
        EGEE and Swiss Bio Grid Collaboration Meeting

        Presentations of scientific results obtained in Bioinformatics and Grid by both communities, EGEE and SwissBiogrid.

        Contact the chairmen if you'll like to give a presentation.