We present some new perspectives on N=1 gauge theories, especially SQCD, D-Brane Quiver Theories and
the MSSM, from the stand-point of recent advances in computational and algorithmic algebraic geometry and
commutative algebra. We introduce the plethystic program which systematically count gauge invariants and encodes certain hidden symmetries. Moreover, we discuss special structures of the vacuum
moduli space, such as that of SQCD being Calabi-Yau