Snakemake: A workflow management system tool to create reproducible and scalable data analyses

Thursday 10 Dec 2020, 10:30 → 11:30 Europe/Zurich

ZOOM:

 https://cern.zoom.us/j/96267620043

10:30 → 11:30 Introduction to Snakemake

https://snakemake.readthedocs.io/en/stable/

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

Speaker: Katya Govorkova (CERN)

snakemake.pdf