Name: BioDynaMo Workshop on Agent-Based Modeling
Start: 2021-11-19T10:00:00+01:00
End: 2021-11-19T18:00:00+01:00
Location: Zoom

BioDynaMo Workshop on Agent-Based Modeling

Friday, November 19, 2021 - 10:00 AM

Monday, November 15, 2021
Tuesday, November 16, 2021
Wednesday, November 17, 2021
Thursday, November 18, 2021
Friday, November 19, 2021
10:00 AM Introduction - Roman Bauer
Introduction
- Roman Bauer
10:00 AM - 10:05 AM
10:05 AM The BioDynaMo Platform: Current State and Future Developments - Lukas Breitwieser (CERN, ETH Zurich) Fons Rademakers (CERN)
The BioDynaMo Platform: Current State and Future Developments
- Lukas Breitwieser (CERN, ETH Zurich)
- Fons Rademakers (CERN)
10:05 AM - 10:20 AM
10:20 AM From multicellular to tissue biomechanics simulations in cancer using multiscale finite element and agent-based models - Vasileios Vavourakis (University of Cyprus / UCL)
From multicellular to tissue biomechanics simulations in cancer using multiscale finite element and agent-based models
- Vasileios Vavourakis (University of Cyprus / UCL)
10:20 AM - 10:40 AM
10:40 AM Emergence and Macroscopic Behaviour ExtRaction (EMBER): a tool for bifurcation analysis of agent-based models - Anne Skeldon (University of Surrey)
Emergence and Macroscopic Behaviour ExtRaction (EMBER): a tool for bifurcation analysis of agent-based models
- Anne Skeldon (University of Surrey)
10:40 AM - 11:00 AM
11:00 AM Parallelised optimisation with BioDynaMo - Ahmad Hesam (CERN)
Parallelised optimisation with BioDynaMo
- Ahmad Hesam (CERN)
11:00 AM - 11:10 AM
11:10 AM Coffee break
Coffee break
11:10 AM - 11:30 AM
11:30 AM Agent-based modelling of radiation-induced lung fibrosis - Nicolo Cogno (TU Darmstadt / GSI Helmholtz Centre)
Agent-based modelling of radiation-induced lung fibrosis
- Nicolo Cogno (TU Darmstadt / GSI Helmholtz Centre)
11:30 AM - 11:50 AM
11:50 AM Agent-based modelling of multi-state biomolecules - Melanie Stefan (Edinburgh University)
Agent-based modelling of multi-state biomolecules
- Melanie Stefan (Edinburgh University)
11:50 AM - 12:10 PM
12:10 PM CryoDynaMo for cryopreservation simulations - Jack Jennings (Newcastle University)
CryoDynaMo for cryopreservation simulations
- Jack Jennings (Newcastle University)
12:10 PM - 12:30 PM
12:30 PM Lunch break
Lunch break
12:30 PM - 1:30 PM
1:30 PM Cryopreservation: a Time Travel Machine - Ramon Risco (University of Seville)
Cryopreservation: a Time Travel Machine
- Ramon Risco (University of Seville)
1:30 PM - 1:50 PM
1:50 PM Leveraging Machine Learning for efficient agent-based simulations and application on biomedical cases - Taghi Aliyev (SCImPULSE Foundation)
Leveraging Machine Learning for efficient agent-based simulations and application on biomedical cases
- Taghi Aliyev (SCImPULSE Foundation)
1:50 PM - 2:10 PM
2:10 PM Open discussion on presentations and overlap
Open discussion on presentations and overlap
2:10 PM - 2:30 PM
2:30 PM Development and calibration of an agent-based model of tumor growth - Ernesto Lima (The University of Texas at Austin)
Development and calibration of an agent-based model of tumor growth
- Ernesto Lima (The University of Texas at Austin)
2:30 PM - 2:50 PM
2:50 PM Agent-Based Modeling of Financial Markets - Philippe Debie (WUR)
Agent-Based Modeling of Financial Markets
- Philippe Debie (WUR)
2:50 PM - 3:10 PM
3:10 PM Improving the continuum modelling within BioDynaMo - Tobias Duswald
Improving the continuum modelling within BioDynaMo
- Tobias Duswald
3:10 PM - 3:20 PM
3:20 PM Coffee break
Coffee break
3:20 PM - 3:30 PM
3:30 PM Agent-based models for socioeconomic simulations - Frank Pijpers (University of Amsterdam / Statistics Netherlands)
Agent-based models for socioeconomic simulations
- Frank Pijpers (University of Amsterdam / Statistics Netherlands)
3:30 PM - 3:50 PM
3:50 PM Modelling of mosquito borne diseases and ML applications to their forecast - Flavio Coelho (University of Geneva)
Modelling of mosquito borne diseases and ML applications to their forecast
- Flavio Coelho (University of Geneva)
3:50 PM - 4:10 PM
4:10 PM Individual-based mathematical model of HIV transmission and its implementation for Malawi - Janne Anton Markus Estill (University of Geneva)
Individual-based mathematical model of HIV transmission and its implementation for Malawi
- Janne Anton Markus Estill (University of Geneva)
4:10 PM - 4:30 PM
4:30 PM Knowledge Transfer and IP in academic and industrial research - Han Hubert Dols (CERN)
Knowledge Transfer and IP in academic and industrial research
- Han Hubert Dols (CERN)
4:30 PM - 4:50 PM
4:50 PM Concluding remarks - Roman Bauer
Concluding remarks
- Roman Bauer
4:50 PM - 5:00 PM
5:00 PM Open discussion on presentations and opportunities
Open discussion on presentations and opportunities
5:00 PM - 5:30 PM

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