BioDynaMo Workshop on Agent-Based Modeling

Friday 19 November 2021 - 10:00
Zoom

        : Sessions
    /     : Talks
        : Breaks
19 Nov 2021
AM
10:00 Introduction - Roman Bauer  
10:05 The BioDynaMo Platform: Current State and Future Developments - Lukas Breitwieser (CERN, ETH Zurich) Fons Rademakers (CERN)  
10:20 From multicellular to tissue biomechanics simulations in cancer using multiscale finite element and agent-based models - Vasileios Vavourakis (University of Cyprus / UCL)  
10:40 Emergence and Macroscopic Behaviour ExtRaction (EMBER): a tool for bifurcation analysis of agent-based models - Anne Skeldon (University of Surrey)  
11:00 Parallelised optimisation with BioDynaMo - Ahmad Hesam (CERN)  
11:10 --- Coffee break ---
11:30 Agent-based modelling of radiation-induced lung fibrosis - Nicolo Cogno (TU Darmstadt / GSI Helmholtz Centre)  
11:50 Agent-based modelling of multi-state biomolecules - Melanie Stefan (Edinburgh University)  
PM
12:10 CryoDynaMo for cryopreservation simulations - Jack Jennings (Newcastle University)  
12:30 --- Lunch break ---
13:30 Cryopreservation: a Time Travel Machine - Ramon Risco (University of Seville)  
13:50 Leveraging Machine Learning for efficient agent-based simulations and application on biomedical cases - Taghi Aliyev (SCImPULSE Foundation)  
14:10 Open discussion on presentations and overlap  
14:30 Development and calibration of an agent-based model of tumor growth - Ernesto Lima (The University of Texas at Austin)  
14:50 Agent-Based Modeling of Financial Markets - Philippe Debie (WUR)  
15:10 Improving the continuum modelling within BioDynaMo - Tobias Duswald  
15:20 --- Coffee break ---
15:30 Agent-based models for socioeconomic simulations - Frank Pijpers (University of Amsterdam / Statistics Netherlands)  
15:50 Modelling of mosquito borne diseases and ML applications to their forecast - Flavio Coelho (University of Geneva)  
16:10 Individual-based mathematical model of HIV transmission and its implementation for Malawi - Janne Anton Markus Estill (University of Geneva)  
16:30 Knowledge Transfer and IP in academic and industrial research - Han Hubert Dols (CERN)  
16:50 Concluding remarks - Roman Bauer  
17:00 Open discussion on presentations and opportunities