BioDynaMo workshop

1 Dec 2016, 09:30 → 2 Dec 2016, 17:30 Europe/Zurich

513/1-024 (CERN)

Thursday 1 December

09:30 → 10:00 Welcome coffee in R2

10:00 → 10:05 Welcome and Roundtable Introduction

Speaker: Fons Rademakers (CERN)

10:05 → 10:20 Workshop Agenda and Objectives - Day 1

Speaker: Fons Rademakers (CERN)

10:20 → 11:00 Overview of the science, user requirements and competitive landscape

Speakers: Marco Manca (CERN), Roman Bauer

11:00 → 11:30 Coffee break

11:30 → 12:30 System overview, architecture and responsibilities - Part 1

Speaker: Lukas Breitwieser (openlab)

cloud_architecture.pdf

12:30 → 14:00 Lunch

14:00 → 14:45 Spatial organization: data structures for scalability

Speaker: Vicktor Drobnyy

14:45 → 15:30 Data I/O: Data Structures for input, output, communication, etc.

15:30 → 16:00 Coffee break

16:00 → 17:00 Status of the BioDynaMo computational kernel

• Status
• Architecture
• Vectorization/parallelization optimizations
• Potential improvements

Speaker: Lukas Breitwieser (openlab)

17:00 → 18:30 Visit to CERN

19:25 → 21:25 Dinner

Friday 2 December

09:30 → 09:45 Workshop Agenda and Objectives - Day 2

Speaker: Fons Rademakers (CERN)

09:45 → 11:00 Wrap-up/Summary of day 1, integration in overall architecture

Speaker: Fons Rademakers (CERN)

11:00 → 11:30 Coffee break

11:30 → 12:00 Physics engines: general overview, engine selection and system integration

Speaker: Ilya Dmitrenok

12:00 → 12:30 Visualization engines for biology simulation

Speaker: Alexey Trusov

12:30 → 13:30 Lunch

13:30 → 14:15 Data sharing with Zenodo

Speaker: Lars Holm Nielsen (CERN)

14:15 → 14:30 Deployment Models: Overview

Speaker: Fons Rademakers (CERN)

14:30 → 15:00 Deployment Models; Single-Node Scenario

15:00 → 15:30 Coffee break

15:30 → 16:00 Deployment Models: Cloud Platform Scenario

Speaker: Alexey Kosterin

16:00 → 16:30 Deploymeny Models: HPC Scenario

16:30 → 17:00 Project Management and Governance

Speaker: Alberto Di Meglio (CERN)

17:00 → 17:30 Next steps, conclusions