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EGEE'06

25โ€“29 Sept 2006
CICG
Europe/Zurich timezone

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Session

Life Sciences (NA4)

26 Sept 2006, 11:00
CICG

CICG

CICG, 17 rue de Varembรฉ, CH - 1211 Geneva 20 Switzerland

Conveners

Life Sciences (NA4): Medical Imaging

  • Johan Montagnat (CNRS)

Life Sciences (NA4): Bioinformatics

  • Christophe Blanchet (CNRS IBCP)

Life Sciences (NA4): Drug discovery

  • There are no conveners in this block

Description

The NA4 Life Sciences session will be the opportunity to
review the status of the biomedical applications
deployed on EGEE. Time will be dedicated to discussion
with related projects and presentations selected from
the conference call for abstracts.
The session is divided in three subsessions dedicated
to medical imaging, bioinformatics and drug discovery.

Presentation materials

There are no materials yet.

  1. 270. GATE radiotherapy planning
    Dr L. Maigne
    26/09/2006, 11:00
  2. 271. 3D MRI and PET simulation, cardiovascular image processing
    Dr Patrick Clarysse
    26/09/2006, 11:10
  3. 272. Medical Imaging Use Cases in Health-e-Child
    Dr Martin Huber
    26/09/2006, 11:20
  4. 273. SEE++ Strabismus surgery planning
    Dr K. Bosa
    26/09/2006, 11:30
  5. 274. SPM-based early diagnosis of Alzheimer's
    Dr L. Torterolo
    26/09/2006, 11:40
  6. 275. FreeSurfer-based brain images analysis
    Dr Arvid Lundervold, Dr Csaba Anderlik
    26/09/2006, 11:50
  7. 276. Establishing a Service Based Biomedical Infrastructure on the EGEE Grid with P-GRADE portal and GEMLCA
    Prof. Pรฉter Kacsuk, Dr Robert Lovas
    26/09/2006, 12:00
  8. 277. Medical Data Manager deployment
    Mr R. Texier
    26/09/2006, 12:10
  9. 278. Wrap-up, overall activities, outstanding issues
    Dr J. Montagnat
    26/09/2006, 12:20
  10. 300. Status of Bioinformatics in EGEE-2
    Dr Christophe Blanchet (CNRS IBCP)
    26/09/2006, 14:00
    Overview and status of the Bioinformatics Applications in EGEE-2
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  11. 310. Service to Encrypt Biological Data on Grid
    Mr Remi Mollon (CNRS IBCP)
    26/09/2006, 14:05
    Users & Applications
    Oral
    Biological data are most times published and then become public ones. They, then, do not need to be isolated or encrypted. But, in some cases, these data stemed from patients or are analyzed with, for instance, pharmaceutical or agronomics goals. Also in simple ways , these data, before to become public, have to be kept confidential while researchers havenโ€™t been able to publish their work...
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  12. 218. Enabling bioinformatics applications to access files over the grid via a GFAL plugin to Parrot
    Dr Giacinto Donvito (INFN-BARI)
    26/09/2006, 14:15
    Users & Applications
    Oral
    One of the problems encountered while porting, in the framework of the BIOINFOGRID EU project, bioinformatics applications to the GRID, concerns their input-output. Many of the widely used tools in bioinformatics, have been developed when the grid technology was not yet established, so they make their input out from the computer local disk. To port such an application on the grid,...
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  13. 303. GPS@, Web interface for Protein Sequence Analysis on Grid
    Dr Christophe Blanchet (CNRS IBCP)
    26/09/2006, 14:25
    Bioinformatics analysis of data produced by high-throughput biology, for instance genome projects [1], is one of the major challenges for the next years. Some requirements of such analysis are to access up-to-date databanks (of sequences, patterns, 3D structures, etc.) and relevant algorithms ( sequence similarity, multiple alignment, pattern scanning, etc.) [2]. Since 1998, we are...
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  14. 345. Blast In Grid (BIG)
    Dr Ignacio Blanquer Espert (DSIC)
    26/09/2006, 14:35
    Users & Applications
    Oral
    The vast amount in complexity of data generated in Genomic Research implies that new dedicated and powerful computational tools need to be developed to meet their analysis requirements. Blast in Grid (Big) is a Grid- enabled Blast service that enables bioinformatic users to deal with datasets up to the order of hundreds of thousand sequences. Many efforts have been done in the literature...
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  15. 134. Bringing 3D-EM to the Grid
    Mrs Germรกn Carrera (Centro Nacional de Biotecnologรญa CSIC)
    26/09/2006, 14:45
    Users & Applications
    Oral
    Bringing 3D-EM to the Grid. --------------------------- 3D-EM is a well established technique that allows us to visualize biological structures across a wide range of sizes. As such, it provides a bridge between more fine-grained techniques (such as X-ray crystallography or NMR) and coarser methods like traditional light microscopy, making an un-substitutable tool for...
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  16. 309. Parallelised Monte-Carlo simulation of large biological networks using the EGEE grid
    Dr Christoph Wierling (Max-Planck-Institute for Molecular Genetics)
    26/09/2006, 14:55
    Users & Applications
    Oral
    Modelling and simulation techniques are valuable tools for the understanding of biological systems. Such systems can be described by a set of constraint biochemical reactions and translated into a system of differential equations. Each reaction has substrates and products with given stoichiometries, and modifiers or catalysts that affect the reaction kinetics. Often the topology of these...
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  17. 327. Status of the Biomedical Applications in EELA
    Vicente Hernandez-Garcia (Polytechnical University of Valencia)
    26/09/2006, 15:05
    Presentation of the EELA project, E-infrastructure shared between Europe and Latin America, status and perspectives of the biomedical applications.
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  18. 174. A GRID PLATFORM FOR ITALIAN BIOINFORMATICS
    Dr Giacinto Donvito (INFN-BARI)
    26/09/2006, 15:15
    Users & Applications
    Oral
    The LIBI (International Laboratory for Informatics) is a project, leadED by PROF. CECILIA SACCONE of the Institute of Biomedical Technologies of the italian National Research Council (CNR) and supported by the Italian Minister for Research, which collects leading italian institutes in bioinformatics working together with technological partnerS with the aim to built a ...
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  19. 308. Perspectives in Bioinformatics area
    Dr Christophe Blanchet (CNRS IBCP)
    26/09/2006, 15:25
    Conclusion and perspectives about Bioinformatics activity in EGEE-2.
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  20. 232. WISDOM: from docking to virtual screening
    Mr Vinod Kasam (CNRS-IN2P3)
    26/09/2006, 16:00
    The talk will present the status of the analysis of WISDOM-I results and the work being done within the BioinfoGRID project to deploy Molecular Dynamics computations on EGEE
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  21. 233. H5N1 data challenge: status and results
    Mr Hurng-Chun Lee (ASGC)
    26/09/2006, 16:20
    The talk will provide an overview of the H5N1 data challenge deployed in April-May 2006. It will provide information on grid deployment metrics as well as information on the biological analysis going-on.
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  22. 234. WISDOM-II: status of preparation
    Mr Nicolas Jacq (CNRS-IN2P3)
    26/09/2006, 16:40
    The talk will provide an update on the status of WISDOM-II, the next docking data challenge to take place from October 1st 2006. Information will be provided on the targets to be docked and the grid deployment strategies.
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