BioDynaMo Workshop on Agent-Based Modeling

Contribution List

1. Introduction

Roman Bauer

19/11/2021, 10:00

2. The BioDynaMo Platform: Current State and Future Developments

Fons Rademakers (CERN), Lukas Breitwieser (CERN, ETH Zurich)

19/11/2021, 10:05

4. From multicellular to tissue biomechanics simulations in cancer using multiscale finite element and agent-based models

Vasileios Vavourakis (University of Cyprus / UCL)

19/11/2021, 10:20

3. Emergence and Macroscopic Behaviour ExtRaction (EMBER): a tool for bifurcation analysis of agent-based models

Anne Skeldon (University of Surrey)

19/11/2021, 10:40

19. Parallelised optimisation with BioDynaMo

Ahmad Hesam (CERN)

19/11/2021, 11:00

5. Agent-based modelling of radiation-induced lung fibrosis

Nicolo Cogno (TU Darmstadt / GSI Helmholtz Centre)

19/11/2021, 11:30

6. Agent-based modelling of multi-state biomolecules

Melanie Stefan (Edinburgh University)

19/11/2021, 11:50

7. CryoDynaMo for cryopreservation simulations

Jack Jennings (Newcastle University)

19/11/2021, 12:10

8. Cryopreservation: a Time Travel Machine

Ramon Risco (University of Seville)

19/11/2021, 13:30

9. Leveraging Machine Learning for efficient agent-based simulations and application on biomedical cases

Taghi Aliyev (SCImPULSE Foundation)

19/11/2021, 13:50

10. Open discussion on presentations and overlap

19/11/2021, 14:10

11. Development and calibration of an agent-based model of tumor growth

Ernesto Lima (The University of Texas at Austin)

19/11/2021, 14:30

12. Agent-Based Modeling of Financial Markets

Philippe Debie (WUR)

19/11/2021, 14:50

20. Improving the continuum modelling within BioDynaMo

Tobias Duswald

19/11/2021, 15:10

13. Agent-based models for socioeconomic simulations

Frank Pijpers (University of Amsterdam / Statistics Netherlands)

19/11/2021, 15:30

14. Modelling of mosquito borne diseases and ML applications to their forecast

Flavio Coelho (University of Geneva)

19/11/2021, 15:50

15. Individual-based mathematical model of HIV transmission and its implementation for Malawi

Janne Anton Markus Estill (University of Geneva)

19/11/2021, 16:10

16. Knowledge Transfer and IP in academic and industrial research

Han Hubert Dols (CERN)

19/11/2021, 16:30

17. Concluding remarks

Roman Bauer

19/11/2021, 16:50

18. Open discussion on presentations and opportunities

19/11/2021, 17:00

21. Epidemiological simulations with BioDynaMo

Tobias Duswald