BioDynaMo Workshop on Agent-Based Modeling

Contribution List

1. Introduction

Roman Bauer

11/19/21, 10:00 AM

2. The BioDynaMo Platform: Current State and Future Developments

Fons Rademakers (CERN), Lukas Breitwieser (CERN, ETH Zurich)

11/19/21, 10:05 AM

4. From multicellular to tissue biomechanics simulations in cancer using multiscale finite element and agent-based models

Vasileios Vavourakis (University of Cyprus / UCL)

11/19/21, 10:20 AM

3. Emergence and Macroscopic Behaviour ExtRaction (EMBER): a tool for bifurcation analysis of agent-based models

Anne Skeldon (University of Surrey)

11/19/21, 10:40 AM

19. Parallelised optimisation with BioDynaMo

Ahmad Hesam (CERN)

11/19/21, 11:00 AM

5. Agent-based modelling of radiation-induced lung fibrosis

Nicolo Cogno (TU Darmstadt / GSI Helmholtz Centre)

11/19/21, 11:30 AM

6. Agent-based modelling of multi-state biomolecules

Melanie Stefan (Edinburgh University)

11/19/21, 11:50 AM

7. CryoDynaMo for cryopreservation simulations

Jack Jennings (Newcastle University)

11/19/21, 12:10 PM

8. Cryopreservation: a Time Travel Machine

Ramon Risco (University of Seville)

11/19/21, 1:30 PM

9. Leveraging Machine Learning for efficient agent-based simulations and application on biomedical cases

Taghi Aliyev (SCImPULSE Foundation)

11/19/21, 1:50 PM

10. Open discussion on presentations and overlap

11/19/21, 2:10 PM

11. Development and calibration of an agent-based model of tumor growth

Ernesto Lima (The University of Texas at Austin)

11/19/21, 2:30 PM

12. Agent-Based Modeling of Financial Markets

Philippe Debie (WUR)

11/19/21, 2:50 PM

20. Improving the continuum modelling within BioDynaMo

Tobias Duswald

11/19/21, 3:10 PM

13. Agent-based models for socioeconomic simulations

Frank Pijpers (University of Amsterdam / Statistics Netherlands)

11/19/21, 3:30 PM

14. Modelling of mosquito borne diseases and ML applications to their forecast

Flavio Coelho (University of Geneva)

11/19/21, 3:50 PM

15. Individual-based mathematical model of HIV transmission and its implementation for Malawi

Janne Anton Markus Estill (University of Geneva)

11/19/21, 4:10 PM

16. Knowledge Transfer and IP in academic and industrial research

Han Hubert Dols (CERN)

11/19/21, 4:30 PM

17. Concluding remarks

Roman Bauer

11/19/21, 4:50 PM

18. Open discussion on presentations and opportunities

11/19/21, 5:00 PM

21. Epidemiological simulations with BioDynaMo

Tobias Duswald