11–14 Feb 2008
<a href="http://www.polydome.org">Le Polydôme</a>, Clermont-Ferrand, FRANCE
Europe/Zurich timezone

The Experiment Dashboard for medical applications

12 Feb 2008, 16:00
1m
Exhibition Hall (<a href="http://www.polydome.org">Le Polydôme</a>, Clermont-Ferrand, FRANCE)

Exhibition Hall

<a href="http://www.polydome.org">Le Polydôme</a>, Clermont-Ferrand, FRANCE

Poster Scientific Results Obtained Using Grid Technology Posters

Speaker

Julia Andreeva (CERN)

Description

Functional magnetic resonance imaging (fMRI) is a popular tool used in neuroscience research to study brain function. The Virtual Lab for fMRI (VL-fMRI) is developed as one of the activities of the ``Medical Diagnosis and Imaging'' subprogram of the Virtual Laboratory for e-Sciences Project. VL-fMRI has taken steps to enable data management and analysis tasks for fMRI studies on the Grid infrastructure. Since spring 2006 the Experiment Dashboard is used for job processing monitoring of the VL-fMRI activities. The Experiment Dashboard provides an easy way to users to follow their jobs on the distributed infrastructure. Furthermore, the system allows to detect problems or inefficiencies of Grid sites or services and to understand the underlying problem. This functionality is important for site administrators and VO support teams.

Provide a set of generic keywords that define your contribution (e.g. Data Management, Workflows, High Energy Physics)

monitoring, medical applications, functional magnetic resonance imaging

1. Short overview

The Experiment Dashboard is a monitoring system initially developed for
the LHC experiments to provide the view of the Grid infrastructure from
the perspective of the LHC virtual organization.
The poster describes the first experience of the deployment and usage of
the system outside the LHC community, for monitoring of medical applications on the Grid.

3. Impact

fMRI studies are data intensive, since large amounts of data are stored,
analyzed and manipulated. They require high throughput computation on
demand for real-time image analysis and for large-scale studies.
Collaboration and distributed computing are essential, in particular for
multi-center studies, where data is distributed. Using the Grid
infrastructure is a natural choice in order to satisfy the requirements
mentioned above.
On the other hand the fMRI users (in particular psychologists, psychiatrists,
radiologists, etc.) typically have limited background in computing and
therefore need a user-friendly environment, which would enable the
preparation, submission and monitoring of their jobs on the Grid. The Experiment Dashboard is
providing the job monitoring functionality for the fMRI users and VO
supporters.

4. Conclusions / Future plans

The first experience of using the Experiment Dashboard by the VL-fMRI
community was positive. It was proven that the system, initially developed
for the High Energy Physics community, is flexible enough and provides
the necessary functionality to be easily adapted to the needs of users
of completely different fields.

URL for further information:

URL to the VLEMED dashboard:
http://opkamer.nikhef.nl/

Primary authors

Andrevan Kan (NIKHEF) Benjamin Gaidioz (CERN) Catalin Cirstoiu (CERN) Gerhild Maier (CERN) Irina Sidorova (CERN) Jeff Templon (NIKHEF) Juha Herrala (CERN) Julia Andreeva (CERN) Kamel Boulebiar (Informatics Institute, University of Amsterdam) Massimo Lamanna (CERN) Pablo Saiz (CERN) Ricardo Da Rocha (CERN) Silvia D. Olabarriaga (Academic Medical Center, University of Amsterdam)

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