21-25 September 2009
Hotel Barcelo Sants
Europe/Zurich timezone

eNMR: Web-enabled life-science applications on EGEE

Not scheduled
Hotel Barcelo Sants

Hotel Barcelo Sants

Barcelona
Demonstration

Speakers

Mr Anurag Bagaria (Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University) Dr Victor Zharavin (Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University)

Project(s) or EGEE activity presenting the demo or poster (project or activity names only)

e-NMR: deploying and unifying the NMR computational infrastructure in system biology (EU 7th framework program, Contract no. 213010).

Abstract

Members of the structural biology community find it challenging to install, maintain and operate dozens of softwares themselves. The e-NMR collaborative EGEE project involves partners from the Universities of Utrecht, Frankfurt, Padova and Florence, and EBI-EMBL that aim at minimizing the complexities for users, and making the process more effective by integrating software into one easily accessible platform. Conventionally users submit jobs to the GRID via the gLite middleware. Recently, users showed preference to use a web-browser interface. We are developing these technologies for life science applications in the field of biomolecular NMR in order to provide a uniform web-interface (portals) for a wide range of applications in NMR signal assignment, protein and DNA/RNA structure calculation, molecular docking etc. The e-NMR infrastructure is operational and integrated into EGEE. At the conference we will present demos/posters of the project and the first implemented e-NMR portals.

Special requirements other than the set up mentioned in the CfA text.

we need to run 2-3 demos in our booth, and place 2-3 posters

3

“e-NMR” booth (reference name: Pina Salente, INFN)

Primary authors

Mr Anurag Bagaria (Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University) Dr Victor Zharavin (Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University)

Co-authors

Alexandre M.J.J. Bonvin (Bijvoet Center for Biomolecular Research, Universiteit Utrecht (BCBR)) Andrea Giachetti (Interuniversity Consortium for Magnetic Resonance on Metalloproteins (CIRMMP)) Antonio Rosato (Interuniversity Consortium for Magnetic Resonance on Metalloproteins (CIRMMP)) Dario Carotenuto (Interuniversity Consortium for Magnetic Resonance on Metalloproteins (CIRMMP)) David Galligani (Interuniversity Consortium for Magnetic Resonance on Metalloproteins (CIRMMP)) E. Frizziero (National Institute of Nuclear Physics, Padua (INFN)) Gijs van der Schot (Bijvoet Center for Biomolecular Research, Universiteit Utrecht (BCBR)) Harald Schwalbe (Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University) Henry Jonker (Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University) Ivano Bertini (Interuniversity Consortium for Magnetic Resonance on Metalloproteins (CIRMMP)) M. Mazzucato (National Institute of Nuclear Physics, Padua (INFN)) M. Verlato (National Institute of Nuclear Physics, Padua (INFN)) Nuno Loureiro Ferreira (Bijvoet Center for Biomolecular Research, Universiteit Utrecht (BCBR)) Peter Güntert (Center for Biomolecular Magnetic Resonance (BMRZ), Goethe-University) Rolf Boelens (Bijvoet Center for Biomolecular Research, Universiteit Utrecht (BCBR)) S. Badoer (National Institute of Nuclear Physics, Padua (INFN)) S. Dal Pra (National Institute of Nuclear Physics, Padua (INFN)) S. Traldi (National Institute of Nuclear Physics, Padua (INFN)) Tsjerk Wassenaar (Bijvoet Center for Biomolecular Research, Universiteit Utrecht (BCBR)) Wim Vranken (European Bioinformatics Institute (EBI-EMBL))

Presentation Materials

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