Nov 4 – 8, 2019
Adelaide Convention Centre
Australia/Adelaide timezone

TMPIFile: A New Parallel I/O Solution in ROOT

Nov 7, 2019, 3:30 PM
1h
Hall F (Adelaide Convention Centre)

Hall F

Adelaide Convention Centre

Poster Track 5 – Software Development Posters

Speaker

Steven Farrell (Lawrence Berkeley National Lab (US))

Description

Communication among processes is generating considerable interest in the scientific computing community due to the increasing use of distributed memory systems. In the field of high energy physics (HEP), however, little research has been addressed on this topic. More precisely in ROOT I/O, the de facto standard for data persistence in HEP applications, no such feature is provided. In order to perform efficient and robust cross-node communications, we introduce the TMPIFile functionality into ROOT where Message Passing Interface (MPI) is used to pass data across the entire distributed system. In the case of ATLAS workflows, instead of writing to file, the compressed data for each node is now stored into the sender side of TMPIFile. After a certain amount of data is collected, the TMPIFile sender can automatically package the data into a memory buffer and send it via MPI. On the other end of the communication, a collector receives buffers from multiple senders, merges them into one file, and at last, writes the file into the disk. Multiple collectors can be created to avoid I/O contention. Test results will be shown from runs at NERSC and ALCF.

Consider for promotion No

Primary authors

Yunsong Wang (Lawrence Berkeley National Lab. (US)) Mr Amit Bashyal (Oregon State University) Taylor Childers (Argonne National Laboratory (US)) Peter Van Gemmeren (Argonne National Laboratory (US)) Vakho Tsulaia (Lawrence Berkeley National Lab. (US)) Philippe Canal (Fermi National Accelerator Lab. (US)) Steven Farrell (Lawrence Berkeley National Lab (US))

Presentation materials