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11/02/2008, 13:30
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Dr Bob Jones (CERN)11/02/2008, 13:50
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Tony Solomonides (University of West England)11/02/2008, 14:05Oral
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Dieter Kranzlmueller (GUP, JKU Linz)11/02/2008, 14:25To successfully complete the set objectives of the EGI vision (http://www.eu-egi.org/vision.pdf), EGI_DS has committed to coordinate and support the following actions: 1) Consolidate the requirements for an EGI organisation from the NGIs and other important stakeholders such as application communities, infrastructure operators, related projects, NRENs. 2) Define the functional role of the...Go to contribution page
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Dr Monique Petitdidier (IPSL)11/02/2008, 16:00Due to the large variety of ES applications it is not possible to describe all the results obtained. However some ES applications, already ported, provide scientific results published in international journal and conference proceedings, and included in PhD report. Those results are a mean to convince the ES community of the potentiality of the Grid infrastructure like EGEE. The ES applications...Go to contribution page
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Dr Francisco Casatejón (CIEMAT)11/02/2008, 16:00Ion kinetic transport application allowed the estimation of ion collisional transport both in tokamaks and stellarators, showing properties that could not be found by the customary methods: transport is not diffusive and that there exist important asymmetries, oppositely to what was thought. Further improvements of the applications are ongoing. MaRaTra calculations have allowed to estimate...Go to contribution page
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Mr Ezio Corso (ICTP / EU-Indiagrid team)11/02/2008, 16:00The proposed application will automatically manage the analysis of a large mass of financial data. For each financial instrument there is a zip file: its content is one text file per trading day containing high frequency time-series information for that instrument. Overall there are 4 TB of unzipped data: compression reduces it to roughly 100 GB. One analysis run consists in launching one job...Go to contribution page
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Mr Dave Reid (University of Glasgow)11/02/2008, 16:00The only method by which variability in nano-CMOS transistor characteristics (and thus the variability and yield of the circuits making use of them) can be predicted, understood and designed around is through large scale numerical simulation. To capture in detail the statistical parameter distributions in real device architectures requires vast computational resources generating extensive...Go to contribution page
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Mr Jose Herrera (Teaching Assistant)11/02/2008, 16:20There are two kinds of parallel loop schedulers to distribute program loops among the processors of a parallel architecture: static and dynamic scheduling. In this work, we will focus on dynamic schedulers because they are more suitable for heterogeneous environments such as a Grid. In general, in these algorithms a central node dynamically distributes a fraction of the computational...Go to contribution page
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Mr Bhalchandra Pujari (Pune University)11/02/2008, 16:20QUANTUM DOTS: A fully self consistent real space DFT approach has been implemented. We calculate the ground state charge and spin density, magnetic state, eigenvalue spectrum and investigate effects of impurity over a wide range of sizes of quantum dots (50-300 nm with 2-20 electrons). The results reveal Wigner localized state (Wigner molecule). The impurity induces the novel magnetic states...Go to contribution page
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Mr Nikolaos Ploskas (University of Macedonia)11/02/2008, 16:25The regression that we used to appreciate the tax policy of Greek government is the following: Sgovt = a0 + a1*T +a2*TR +a3*INT +a4*G where ai, i=1, …, 4 are the coefficients of the regression and a0 is the constant term, Sgovt the Government budget deficit/surplus, TR is the Transfer Payments, INT is the Net Interest Payments and G is the Government Purchases. Due to the lack of real...Go to contribution page
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Dr Ladislav Hluchy (Institute of Informatics, Slovakia)11/02/2008, 16:30The key requirements of ES applications on data management, job management and portal technology have been identified and analyzed in five ways: (1) A panel of representative ES applications have been analysed; (2) Existing data management tools and policies that are being used in ES applications are surveyed in order to find common required features of ES community; (3) The existing Grid data...Go to contribution page
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Mr Rene Metery (CS)11/02/2008, 16:40The interfacing process has been realized with the different operations made by an end-user in mind, when he wants to authenticate and submit a job on the grid. First the creation of an actor making the voms-proxy-init operation was needed to create a temporary proxy as well as returning informations concerning his role in his Virtual Organization. Then the creation of several separate actors...Go to contribution page
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Dr Aneta Karaivanova (IPP-BAS)11/02/2008, 16:40SALUTE integrates a set of advanced Monte Carlo and quasi-Monte Carlo algorithms developed by the application team. In our recent work we studied the inhomogeneous case in the presence of electric field. We obtained new results for the distribution density, energy distribution and Wigner function, which give insight into the quantum effects that occur in this case. The understanding of the...Go to contribution page
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Mr Giuseppe Iellamo (Università di Messina)11/02/2008, 16:50The application is divided into two different activities: - the Multimedia Upload activity during which service providers make multimedia objects available to their customers by uploading them to the Grid Storage Elements. - the Multimedia Streaming activity where the media are requested by end-users through a GUI. Upon these requests the media chunks are recovered, tailored and finally...Go to contribution page
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Dr Tzvetan Ostromsky (IPP - BAS, Sofia, Bulgaria)11/02/2008, 16:50The Danish Eulerian Model (DEM) is a powerful air pollution model, designed to calculate the concentrations of various dangerous species over a large geographical region (e.g. Europe). This is a huge computational task and requires significant resources of storage and CPU time. Parallel computing is essential for the efficient practical use of the model. However, it is not sufficient when a...Go to contribution page
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Mr Vladimir Voznesensky (Inst. of Information Systems, RRC "Kurchatov Inst.")11/02/2008, 17:00Two examples of CPU-intensive numerical optimisation applications were found in Russian nuclear fusion and plasma science: optimisation of stellarator magnetic field configuration and optimisation of the reflectometry radiowave shape in ITER plasma. The first application has been successfully ported from a supercomputer to the EGEE infrastructure. This porting has revealed two issues. First,...Go to contribution page
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Dr Osvaldo Gervasi (Dept. of Mathematics and Computer Science, University of Perugia)11/02/2008, 17:00The current project involves Molecular Dynamics calculations on cytochrome c oxidase. CcO is the terminal enzyme of respiratory chains found in the inner mitochondrial membranes or in many bacteria and the last acceptor of electrons from oxidizing processes involving nutrient molecules. The biophysical interest of this project stems on long standing problems which concern the assignment...Go to contribution page
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Dr Stefano Dal Pra (INFN)11/02/2008, 17:10RISICO works on a set partitioned on identical and algorithmically independent squared cells.Computing a cell requires "cell status" and meteo data and produces a "next status" as also the wanted output of the simulation. A RISICO run on the Italian territory with cells of 1 km^2 requires approximatively the computing of 330.000 cells and 150Mb of input data, producing 1Gb of output data...Go to contribution page
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Dr Franck Cappello (INRIA)12/02/2008, 09:00Existing or Prospective Grid Services
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Gergely Sipos (Mr.)12/02/2008, 09:45
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Dr Ignacio Blanquer (UPV)12/02/2008, 11:00Metagenomic analysis requires several iterations of alignment and phylogenic classification steps. Source samples reach several millions of sequences. These sequences are compared to the eukaryotic species of the "Non-redundant" database. The deployment process involves three stages: First, public databases are copied in relevant SEs to reduce the access time by increase the geographic...Go to contribution page
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Dr Tristan Glatard12/02/2008, 11:00
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Ms Katie Weeks (STFC)12/02/2008, 11:00The User Accounting system has simplified administration of users on the NGS. Users who go over their allocated CPU hours find themselves warned when they reach 90% of their allocation, and automatically locked out when they reach 100%. They can apply for further resources using the online form. Since the system entered production in October 2006, it has locked 74 users out, of which 80%...Go to contribution page
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Ms Jaroslava Schovancova (CESNET)12/02/2008, 11:00VO AUGER simulations made use of many CPUs connected in the EGEE Grid, which enabled us to simulate events with higher precision. The results of simulations were uploaded and stored on Storage Elements and registered in LFC Catalogue, therefore they can be accessed globally by all the VO AUGER members.Go to contribution page
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Dr Diane Lingrand (UNSA)12/02/2008, 11:10Existing or Prospective Grid ServicesOralJobs submitted to a production grid infrastructure are impacted by a variable delay resulting from the grid submission cost (middleware overhead and queuing time). The actual execution time of a job will depend on the process execution time, which can be known through benchmarks, and the variable grid latency duration, which is difficult to anticipate due to the complexity of the grid...Go to contribution page
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Dr Christophe Blanchet (CNRS IBCP)12/02/2008, 11:20The nucleosome involves a complex of eight proteins (histones) binding to 147 base-pairs of DNA. Simulating a nucleosome core bound to a single DNA sequence would require treatment of roughly 250,000 atoms and many months of computer time. To understand selective binding we need to compare many potential binding sequences and hence perform many such simulations. Given that any of the four...Go to contribution page
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Dr Andrey Belikov (Kapteyn Astronomical Institute)12/02/2008, 11:20The data volume produced by LOFAR will reach 4 PB per year. Data processing of Lofar requires an online access to the most of this data volume. We will need to implement a distributed data storage in a multicomponent environment, and the multicomponent environment (from the point of view of hardware, software and grid concepts) will become a key feature of the project. We will need to...Go to contribution page
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Dr Nicolo Magini (CERN IT)12/02/2008, 11:20The LHC experiments perform most, if not all, of their computing activities on Grid resources. This requires an accurate and updated picture of the status of the Grid services used by them, and of the services which are specific to the experiment. To achieve this, a common method is to periodically execute tests on the services, where the functionalities tested may be different from a VO to...Go to contribution page
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Mr Brice Videau (INRIA / LIG), Dr Olivier Richard (INRIA / LIG)12/02/2008, 11:30Existing or Prospective Grid ServicesOralExpo is used to analyze the performances of the file broadcasting tool Kastafior. Kastafior broadcasts a single file onto a given set of nodes. The aim of this experiment is to study Kastafior's performances across Grid'5000 when the file size and the number of nodes vary. The script used to conduct the experiment is only 15 lines long. Expo interprets this script and issues reservation...Go to contribution page
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Mr Alexandru Ionut Munteanu (INSERM, UMR S 525, Faculté de Médicine Pitié-Salpêtrière, Paris, France)12/02/2008, 11:40As part of the research conducted at the INSERM U525 laboratory, the THESIAS software was created in order to analyze statistically, associations between gene polymorphisms and diseases. Given a data set containing the genotypes of case and control individuals, THESIAS measures haplotype frequencies combining several polymorphisms and associations with the disease. Until now this kind of...Go to contribution page
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Dr Salvatore Orlando (INAF - Osservatorio Astronomico di Palermo)12/02/2008, 11:40FLASH is a parallel MHD code based on Message-Passing Interface (MPI) library and designed to be executed on HPC systems. The simulations performed required a substantial amount of distributed computational resources made available through the GRID infrastructure of COMETA.Go to contribution page
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Dr Adrian Muraru (CERN IT), Dr Andrew Maier (CERN IT), Dr Hurng-Chun Lee (CERN IT), Dr Jakub Moscicki (CERN IT), Dr Patricia Mendez Lorenzo (CERN IT/GD)12/02/2008, 11:40The CERN Grid application support team has been working with the following real-life applications: medical and particle physics simulation (Geant4, Garfield), satellite imaging and geographic information for humanitarian relief operations (UNOSAT), telecommunications (ITU), theoretical physics (Lattice QCD, Feynman-loop evaluation), Bio-informatics (Avian Flu Data Challenge), commercial...Go to contribution page
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Frédéric Wagner (LIG - MOAIS project), Guillaume Huard (LIG - MOAIS project), Serge Guelton (LIG - MOAIS project), Thierry Gautier (LIG - MOAIS project), Vincent Danjean (LIG - MOAIS project), Xavier Besseron (LIG - MOAIS project)12/02/2008, 11:50Application Porting and DeploymentOralExploiting efficiently the resources of whole Grid'5000 with the same application requires to solve several issues: 1) resources reservation; 2) application's processes deployment; 3) application's tasks scheduling. For the IV Grid Plugtests, we used a dedicated tool for each issue to solve. The N-Queens contest rules imposed ProActive for the resources reservations (issue 1). Issue 2...Go to contribution page
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Mr Jan Astalos (Institute of Informatics, Slovak Academy of Sciences)12/02/2008, 12:00The experiment was performed in the scope of collaboration between Astronomical Institute of Slovak Academy of Sciences, Catania Observatory and Adam Mickiewitz University in Poznan. The simulation was ported to EGEE by Institute of Informatics Slovak Academy of Sciences and it ran in EGEE and TriGrid from February to October 2007. The simulation consists of a sequence of sub-simulations...Go to contribution page
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Dr Andreas Gisel (Istituto di Tecnologie Biomediche, CNR)12/02/2008, 12:00To find correlation between genes within different experiments, clustering is a good and challenging analysis method for data sets of such size and complexity. We have chosen an unsupervised hierarchical clustering algorithm based on the cooperative behaviour of an inhomogeneous lattice of coupled chaotic maps, the Chaotic Map Clustering. Analyzing data sets of 587 samples we were able to...Go to contribution page
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Prof. Peter Kacsuk (MTA SZTAKI)12/02/2008, 12:00Users of gUSE can be either grid application developers or end-users. Application developers can develop sophisticated workflow applications where workflows can be embeded into each other at any depth. Even recursive workflows allowed. gUSE enables to embed workflows derived from other workflow systems (e.g. Taverna, Triana, Kepler, etc.). gUSE supports the concept of workflow templates,...Go to contribution page
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Mr David Loureiro (ENS-Lyon / INRIA / CNRS / UCBL)12/02/2008, 12:10
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Dr Marcos Lopez-Caniego (Instituto de Fisica de Cantabria, CSIC-UC, Santander, Spain)12/02/2008, 14:00Several techniques have been proposed to detect the SZ clusters. Most of them are based on linear filters that try to take into account the frequency dependance of the SZ effect to combine information from different channels to produce a single map where the clusters can be detected with a higher SNR than in the individual frecuency maps (Planck will image the microwave sky in nine...Go to contribution page
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Areski Flissi (LIFL - UMR 8022 CNRS)12/02/2008, 14:00Existing or Prospective Grid ServicesOralDeployment, which can be defined as a set of tasks to orchestrate such as installation/uninstallation of software on remote nodes, configuration of nodes and software, starting/stopping of application servers or data collecting, is a nightmare for Grid Computing users. A first challenge is complexity of the orchestration of the several deployment tasks and software dependencies, and the...Go to contribution page
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Mr Artyom Sharov (Technion - Israel Institute of Technology)12/02/2008, 14:00Tasks are submitted via web and parallelized into thousands or even millions of CPU-bound jobs ranging from a few seconds to a few minutes long. Efficient and reliable execution is complicated due to unbounded queuing times, high execution and scheduling overheads, high job failure rates and insufficient scalability of the EGEE middleware. Our solution is to first submit lightweight clients...Go to contribution page
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Benjamin Gaidioz (CERN), Julia Andreeva (CERN)12/02/2008, 14:00The LHC experiments ALICE, ATLAS, CMS and LHCb are preparing for data acquisition planned to start in 2008. The LHC experiments are relying on several GRID infrastructures (LCG/EGEE, OSG, NDGF). Providing the reliable monitoring system which enables the transparent view of the experiment activities across different middleware platforms and combines the Grid monitoring data with information...Go to contribution page
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Dr Andrew Maier (CERN IT), Dr Birger Koblitz (CERN IT), Dr Elisa Lanciotti (CERN IT), Dr Roberto Santinelli (CERN IT)12/02/2008, 14:20The Bookkeeping (Bkk) is a crucial component in the LHCb software infrastructure, both for the production, as it registers and uploads to the database all newly produced files, as well as for the data analysis, since it is the tool which allows physicists to retrieve datasets and their metadata. The motivation for this activity on the Bkk arises from requirements of the physicists, who...Go to contribution page
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Yiannis Georgiou (LIG Laboratory)12/02/2008, 14:20Existing or Prospective Grid ServicesOralOur approach consists by a (RMS) resource management system OAR, responsible for the efficient allocation of local cluster resources and a grid lightweight service CIGRI that uses only the idle cluster resources by not interfering to the normal functionality of the interconnected clusters. The approach is based on the concept of "best effort" tasks, introduced by OAR. This type of jobs have...Go to contribution page
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Mr Matthieu REICHSTADT (Auvergrid), Mr Philippe LEROY (INRA Clermont-Ferrand)12/02/2008, 14:20A long term project of the IWGSC is to sequence the wheat genome to decipher the chromosomal location and biological function of all genes. This knowledge should enhance the understanding of the biology of the wheat plant and create a new paradigm for the improvement of this major crop. Because of the genetic and metabolic conservation among species in the grass family,efforts to decipher gene...Go to contribution page
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Dr Giuliano Taffoni (INAF-OA Trieste)12/02/2008, 14:30Astrophysical applications handle simulated, theoretical and observed data and the amount of data requested by a single application is not negligible. Astronomical data are usually kept in databases most of them are now federated in the VObs. Users accessing these data usually expect some key capabilities like: a) find data by specifying their characteristics; b) retrieve them whatever is...Go to contribution page
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Maria Dimou (CERN)12/02/2008, 14:40Today’s Grid usage is still very far from the simplicity and functionality of the web. While pressing for middleware usability, we try to turn the Global Grid User Support (GGUS) into the central tool for identifying areas in the support environment that need attention. To do this, we exploit GGUS' capacity to expand, by including new Support Units that follow the project's operational...Go to contribution page
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Giulia De Sario (Istituto di Tecnologie Biomediche, CNR)12/02/2008, 14:40The algorithm is a very high data and data-access intensive application. The results of the functional analogous search demonstrates that the information contained by the GO is adequate to run such analysis using the gene production description. For example most of the homologous gene products of most of the model organisms were assigned as functional analogues, although the annotations were...Go to contribution page
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12/02/2008, 14:40
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Dr Luciano Milanesi (National Research Council - Institute of Biomedical Technologies)12/02/2008, 15:00The BioinfoGRID adopt high-level user interfaces, common to all the different BioinfoGRID applications, in order to exploit the Grid services provided within European Grid Infrastructures using a more user-friendly approach. One of the activities within the project was to develop a Bioinformatics Portal, to simplify the services request and the jobs submission to the Grid, including the...Go to contribution page
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Dr Steve Fisher (RAL)12/02/2008, 15:00R-GMA is currently being used by APEL, the ARDA Dashboard and Service Discovery on the LCG grid and by Grid Ireland. APEL uses a producer at each site to publish accounting data. A consumer is used to accumulate all of the data in a central location where it is migrated off line for later analysis. The ARDA dashboard has a consumer that pulls in monitoring data about the status of grid jobs as...Go to contribution page
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Dr André Tilquin (CPPM/IN2P3)12/02/2008, 15:00Evidence for the accelerated expansion of the Universe has been observed in the last decade with the many cosmological observations. The origin of accelerated expansion remains one of the most challenging research activities today. Progress in this field requires both theoretical innovations and many accurate observational probes with controlled systematic error estimates. The difficulty in...Go to contribution page
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Dr Thomas Zwinger (CSC - Scientific Computing Ltd.)12/02/2008, 16:00In contrary to scaled equations, Elmer applies Full Stokes (FS) simulations, where horizontal scales of the mesh are of similar size than vertical, leading to a scale-up of the problem size by a factor 100. Models earlier run on a single workstation consequently occupy 100 and more processors if FS is applied, demanding parallel computations on clusters or Grid environments. The main...Go to contribution page
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Dr Silvio Pardi (Dipartimento di Scienze Fisiche - Università degli Studi di Napoli Federico II - Italia)12/02/2008, 16:00The network reliability appear to be a crucial factor to guarantee the distributed services availability and the proper system functioning of a Grid infrastructure. The network performances can affect dramatically the job computation time in those applications that processing bulk of dataset and is obviously crucial during data replication activities. Currently in the main Grid deployments,...Go to contribution page
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Mr Fotis Psomopoulos (Aristotle University of Thessaloniki)12/02/2008, 16:00Gene ontology can be thought of as a database of expert-based terms. The application presented utilizes the motifs that exist in already annotated protein sequences in order to model the corresponding GO terms. The input data set is created in a semi-automatic way, using the unique (UNIPROT) code of each protein and the InterProScan tool so that all available sequence databases (such as...Go to contribution page
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Mr Matteo DIARENA (CNRS IN2P3 LPC Clermont-Ferrand), Mr Simon NOWAK (CNRS IN2P3 LPC Clermont-Ferrand)12/02/2008, 16:00The medical field offers a wide and challenging scenario in which new grid applications can be developed to improve collaborative work between scientists. The development of grid-based medical applications needs to take into account some key factors such as the need to conform to strict legal constraints in terms of data privacy and security. Moreover physicians are quite reluctant to use new...Go to contribution page
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Mr Esteban Freire Garcia (CESGA)12/02/2008, 16:00Currently a well-defined set of procedures is followed in PPS, beginning with the pre-deployment activity and finishing with the approval of a new middleware release that can go into PROD. The PPS Coordination Team takes care of supervising all these steps, mainly trying to spot possible bugs in the middleware before it goes into PROD. Unfortunately, VO contribution in this part of the...Go to contribution page
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Dr Christos Lampoudis (Aristotle University of Thessaloniki - Department of Physics), Prof. Dimitrios Sampsonidis (Aristotle University of Thessaloniki - Department of Physics)12/02/2008, 16:00AIDA specifically addresses the needs of the ATLAS high energy physics experiment, performing large scale data processing on globally distributed resources. AIDA is an easy-to-use strong tool implemented in java. User faces a single Graphical User Interface, instead of having a set of different applications. In such a way, the application offers the opportunity to avoid the complexity of...Go to contribution page
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Mr David Loureiro (ENS-Lyon / INRIA / CNRS / UCBL)12/02/2008, 16:00When dealing with grid environments, grid middelware are powerful tools for the development of computational servers able to exploit the available resources. But managing a grid middleware, and a fortiori the grid environment itself can be a hard task when no dedicated tools exist. Some are usable through nice graphical interfaces, but they are all dedicated to one or some limited tasks and do...Go to contribution page
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Pier Giovanni Pelfer (Dept. of Physics, University of Florence / INFN)12/02/2008, 16:00A primary goal of ArchaeoGRID as simulation engine is the development of simulation of integrated human-in-natural-systems models, which are treated as complex hypotheses, tested against the archaeological record and used for reconstructing the ancient societies history integrated with the Earth history. In our study cases archaeological and non archaeological data are multivariate geospatial...Go to contribution page
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Jerome Berthier (IMCCE - Observatoire de Paris)12/02/2008, 16:00Numerical simulations, data analysis, as well as design study for new instruments and telescops, often require important computing time. If is not uncommon that the analysis of a single observation requires to run a huge number of times the same simulation code to explore the parameters space. On the other hand, the same reduction pipeline has to be used several times for data reduction of a...Go to contribution page
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Dr Harald Gjermundrod (University of Cyprus)12/02/2008, 16:00The Batch Service editor within the g-Eclipse framework allows the administrator of a Grid site to manage her site(s). The editor presents the administrator with a color-coded representation of the current state of the computing element, queues, and worker nodes as well as their properties. For large sites, the administrator can zoom in/out to view all the elements of the site. Using this...Go to contribution page
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Roberto Pugliese (ELETTRA)12/02/2008, 16:00ELETTRA is now building a new light source FERMI@Elettra which is a single-pass FEL user-facility covering the wavelength range from 100 nm (12 eV) to 10 nm (124 eV). The advent of femtosecond lasers has revolutionized many areas of science from solid state physics to biology. This new research frontier of ultra-fast VUV and X-ray science drives the development of a novel source for the...Go to contribution page
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Dr Christophe Blanchet (CNRS IBCP)12/02/2008, 16:00Bioinformatics analysis of data produced by high-throughput biology, for instance genome projects, is one of the major challenges for the coming years. Two of the requirements for this analysis are access to up-to-date databanks (of sequences, patterns, 3D structures, etc.) and access to relevant algorithms (for sequence similarity, multiple alignment, pattern scanning, etc.). Since 1998, we...Go to contribution page
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Jan Kmunicek (CESNET)12/02/2008, 16:00Charon GUI is Java-based application currently running at specific server that functions as a dedicated frontend/user interface to individual virtual organization on EGEE or national Grid environment. The one and only prerequisite on the server side is to have Java Runtime Environment installed. Charon GUI displays on a remote X-server that can be either Linux OS or MS Windows with X-Window...Go to contribution page
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Santanu Das (Unknown)12/02/2008, 16:00Condor is a specialized workload management system for compute-intensive jobs, which can effectively manage a variety of clusters of dedicated compute nodes. Today, there are grid schedulers, resource managers, and workload management systems available that can provide the functionality of the traditional batch queuing system e.g. Torque/PBS or provide the ability to harness cycles from idle...Go to contribution page
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Mr Tomas Kulhanek (CESNET)12/02/2008, 16:00A significant activity in the classic distributed solution with computer servers and long-term storage devices of high capacity is the MeDiMed project (Metropolitan Digital Imaging System in Medicine), where the Masaryk University in Brno cooperates with a range of university and city hospitals. To be interconnected they take advantage of the CESNET2 high speed computer network. The goal of...Go to contribution page
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Dr Ivan Porro (Department of Communication, Computer and System Sciences, University of Genoa)12/02/2008, 16:00Nowadays, many biomedicine studies are dealing with large, distributed, and heterogeneous repositories as well as with computationally demanding analyses. Complex integration techniques are more often required to handle this complexity, even if for small sized applications, when they are intrinsically distributed: this particular scenario is frequently found in medical informatics...Go to contribution page
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Mr Andreas Menychtas (NTUA), Mr Theodoros Athanaileas (NTUA)12/02/2008, 16:00This tool was developed following a multi-tier architectural approach in order to provide access to the core grid services through a state of the art web interface. Initially the in silico oncology source code was modified to facilitate the execution of simulations to grid nodes using parameter files that are automatically created from the end users using the tool. Additionally, grid specific...Go to contribution page
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Ales Krenek (Masaryk Univeristy), Cecile Germain-Renaud (Unknown)12/02/2008, 16:00The complexity of the hardware/software components, and the intricacy of their interactions, defeat attempts to build fault models only from a-priori knowledge. A black-box approach, where we observe the events to spot outliers, is appealing by its simplicity, and large body of experience in quality control. The general challenge is to detect anomalies as soon as possible. Much better...Go to contribution page
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Prof. Peter Kacsuk (MTA SZTAKI)12/02/2008, 16:00For the EGEE users, having the option to enhance jobs with the ability to seamlessly migrate them to a DG environment will open up new possibilities and enable more widespread and frequent use of data challenge problems that require massive resources. Large DGs far outstrip the performance of even the largest supercomputers, and although DGs are certainly not intended, nor suited, for every...Go to contribution page
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Dr J.R. Bilbao-Castro (Dept. Computer Architecture and Electronics, University of Almería, 04120, Almería, Spain)12/02/2008, 16:003D Electron Tomography is a key imaging technique when studying large biological complexes like cells organelles or even whole cells structures. Projection images of the specimen are taken through electron microscopes. Nevertheless, technical limitations reduce the number and quality of the projections that can be obtained from the specimen under study. Because of this, the commonly used...Go to contribution page
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Prof. Ilias Maglogiannis (University of Aegean)12/02/2008, 16:00Users, accessing the platform’s Web interface through the implemented portal, are given the ability to submit their experiments, retrieve their results and also compare them with formerly submitted experiments. Access to services is enabled by parsing input files and accordingly activating the ‘gridified’ algorithms for processing the microarray experiments. Both data parsing operations and...Go to contribution page
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Dr Nicola Venuti (NICE srl)12/02/2008, 16:00With Enginframe user can interact with files on the UI, can submit and monitor jobs to Grid and manage data and job output inside the VO belongs to. The Web portal eliminates any problems and needs about particular Operating System running on the client, the user can interact with the Grid from everywhere and with everything: a Java compliant web browser is only required. The purpose of VOMS...Go to contribution page
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Mr Azir Aliu (SEEU)12/02/2008, 16:00Our algorithm enhances the results of digital mammogram processing. For image enhancements and appearance improvement, noise or error elimination, or to highlight certain image features, the algorithm uses density measures based on a normalized breast representation, method of image equalization and Kuvahara filter. This first phase is designed to have a very high sensitivity; the large number...Go to contribution page
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Mr Ruben Alvarez (European Space Agency)12/02/2008, 16:00With the introduction of Grid technologies in the European Space Astronomy Center (ESAC) and once the astronomers are getting used to them, new possibilities both for result enhancement and for collaboration with other Astronomy institutes have started to be explored. Here we present some examples of such usage, showing the current status and also the immediate future development: a) The...Go to contribution page
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Ms Dorine FOUOSSONG (IN2P3-LPC), Mr STEPHANE LIAUZU (IN2P3-LPC)12/02/2008, 16:00Our first goal is an evaluation of the overall security. Using the grid introduces in the information system of a laboratory or a company new infrastructure and processes that have to be taken into account in the management. This is specially true in the security management, where relevant subsystem should be introduced in the trust chain. The trust chain is the subset of the information...Go to contribution page
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Mr Emmanuel Medernach (LPC - Clermont, France)12/02/2008, 16:00Jobs durations vary a lot among groups or users depending of the kind of applications. For instance a group dedicated to test the middleware have 90% of their jobs of duration less than 5 minutes. Biomed jobs have a quarter of jobs running less than 2 minutes, another quarter between 2 minutes and 8 hours, another quarter between 8h and one day and the last quarter between one day and 3...Go to contribution page
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Mr Kamel Boulebiar (Institute of Informatics / Academic Medical Center, University of Amsterdam), Mr Piter de Boer (Institute of Informatics, University of Amsterdam), Dr Silvia Olabarriaga (Institute of Informatics / Academic Medical Center, University of Amsterdam), Dr Tristan Glatard (Institute of Informatics / Academic Medical Center, University of Amsterdam)12/02/2008, 16:00* Data management requirements The data has to be handled directly by end-users. It is thus mandatory to set up a high-level data management tool providing a uniform view of distributed storage. A user-level file access control is also required to prevent users from ruining someone else's experiment because of wrong data manipulations. Although the Logical File Catalog provides a uniform...Go to contribution page
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Dr Francisco CASTEJON (CIEMAT), Mr Vladimir Voznesenskiy (Inst. of Information Systems, RRC "Kurchatov Inst.")12/02/2008, 16:00Two representative fusion applications have been chosen to show the power of grid computing for this community. The first is the grid-based stellarator optimization, run in the RDIG VO; the second is Ion Kinetic Transport, which is running in the fusion VO. Both applications have been successfully ported from a supercomputer to the EGEE infrastructure. The porting of the first implied the use...Go to contribution page
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Dr Harald Kornmayer (NEC Laboratories Europe)12/02/2008, 16:00The g-Eclipse framework requires stable and reliable basic Grid services like information systems, data replication systems and resource brokers. g-Eclipse is a JAVA application and requires either JAVA APIs or well defined WS descriptions for the basic Grid services, which are independent of the Grid operation system. For the demo, only a computer with JAVA and an arbitrary OS (Windows,...Go to contribution page
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Dr Adrian Muraru (CERN IT), Dr Andrew Maier (CERN IT), Dr Hurng-Chun Lee (CERN IT), Dr Jakub Moscicki (CERN IT), Dr Patricia Mendez Lorenzo (CERN IT)12/02/2008, 16:00DemonstrationGanga has already gained widespread use, the incomplete list of applications using Ganga include: Imaging processing and classification (developed by Cambridge Ontology Ltd.), Theoretical physics (Lattice QCD, Feynman-loop evaluation), Bio-informatics (Avian Flu Data Challenge), Geant4 (Monte Carlo package), HEP data analysis (ATLAS, LHCb). All these communities have different goals and...Go to contribution page
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Mr David Weissenbach (CNRS)12/02/2008, 16:00For now, applications dealing with seismic noise (signal collected between earthquakes, more than 99% of the data) or major earthquakes are taking advantage of the grid facilities: - average seismic noise level per day over the past years is computed - polarized noise and source determination also over the past years. Although much more demanding on CPU time, this was achieved...Go to contribution page
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Dr Sandro Fiore (SPACI Consortium & University of Salento)12/02/2008, 16:00Decoupling routing aspects from data access, the GRelC DAIS can be used in several data integration scenarios. Some examples are: integration of information stored within several distributed metadata DBs for Earth Science to perform queries across distributed collections described by a common metadata model; distributed queries on accounting services deployed at several sites (e.g. APEL or...Go to contribution page
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Dr Gabriel Neagu (National Institute for R&D in Informatics - ICI Bucharest, Department of Research)12/02/2008, 16:00The candidate applications to be ported on grid were selected based on the following criteria: mature implementation in classic mode, extensive memory and/or computational requirements, grid as innovative approach for the given MOSI domain, expected user community in research and academic area, potential interest from industry. The list of selected applications includes: GridModRed - Model...Go to contribution page
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Dr Cevat Sener (Middle East Technical University)12/02/2008, 16:00The candidate solutions found in AE are used to generate "offsprings" based on their fitness values; fitter candidates generating more offsprings into the next generation. This makes the entire computational requirements tend to be proportional to that of evaluating a single individual. Hence, the fitness evaluations of candidate solutions need to be spread over a large number of processors to...Go to contribution page
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Dr Valerio Angelini (CNR-IMAA)12/02/2008, 16:00RISICO presently runs in gLite accessing input data stored in a SE using various proprietary formats. Our aim is to integrate this application with a framework of standard geospatial web services to gain more flexibility. In this case the data will be stored in standard formats (GRIB) and will be accessed through standard interfaces. The workflow will be as follows: -The CP user selects an...Go to contribution page
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Mr Andreas Skarlatoudis (Geophysical Laboratory, Univ. Thessaloniki), Mr Paschalis Korosoglou (Grid Operations Centre, A.U.Th.)12/02/2008, 16:00The aim of this study is to shed some light into the ground motion properties of Thessaloniki in 3 dimensions. Using a computer code that implements a 3D - 4th order staggered-grid velocity-stress finite-difference (FD) scheme (Moczo et al., 2002) full 3-dimensional synthetics of ground motion have been computed. The studying grid covers an area of 63 km2 with a depth of 12 km, which is...Go to contribution page
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Mr Marcin Plociennik (Poznan Supercomputing and Networking Center)12/02/2008, 16:00The package includes an enhanced version of fusion application that won the last User Forum Best Demo award in Manchester. In environmental sciences we will show the integration of an open source Geographical Information Systems on the Grid, GRASS, which is used for environmental analysis of water in reservoirs. Also in the environment sector we will show the application to analyze the...Go to contribution page
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Dr Mikhail Ustinin (IMPB RAS)12/02/2008, 16:00The MathCell Project includes 3D interactive living cell model, encyclopedia on mathematical modeling of cell and software for modeling of basic processes in living cell. Within the limits of the Project the interactive environment was developed, which allows to perform calculations of mathematical models using GRID infrastructure. The special Job Maintenance System was developed which...Go to contribution page
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Mr Nikolay Marusov (RRC "Kurchatov Inst.")12/02/2008, 16:00We examine the hypothesis for a fractal condensed matter composed of magnetized nanodust capable of forming a skeleton of filamentary structures observed in various laboratory electric discharges, severe weather phenomena and space [2], suggested for explaining the unexpected longevity of these filaments and their unexpected (sometimes transverse) direction with respect to that of main...Go to contribution page
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Mr Mario Lassnig (CERN & University of Innsbruck, Austria)12/02/2008, 16:00We analyse the Distributed Data Management system Don Quijote 2 (DQ2) of the High-Energy Physics experiment ATLAS at CERN. ATLAS presents unprecedented data transfer and data storage requirements on the petascale and DQ2 was built to fulfill these requirements. DQ2 is built upon the EGEE infrastructure, while seamlessly enabling interoperability with the American OSG and the Scandinavian...Go to contribution page
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Mr Marek Ciglan (Institute of Informatics, Slovakia)12/02/2008, 16:00From the viewpoint of grid computing, SM-PSE requires: Computing Intensive Parametric Studies: The created cell tools enable users to repetitively create hundreds of huge models, which, consecutively, will be stereologically verified. The computation of volume and surface densities of a single model can take up to hours; i. e., computation of all the models would last for...Go to contribution page
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Ms Radoslava Goranova (Unknown)12/02/2008, 16:00Basic characteristics of service-oriented architectures are self-describing interfaces in platform-independent XML documents and interoperability between different systems and programming languages. gLite provides a lot of grid services but very few of them have self-describing interfaces with endpoints and WSDL documents. The lack of WSDL files for main gLite grid services make them very hard...Go to contribution page
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Mr Paul De Vlieger (ERIM / LPC)12/02/2008, 16:00Grids provide a lot of possibilities in terms of data storage and exchange. By using the telemedecine application developed at LPC Clermont-Ferrand we plan to add some functionalities to manage patient data throughout medical centres. To get back all data around Europe concerning a patient we need to be able to identify these data ownership while certifying that alone, it must be impossible...Go to contribution page
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Mr Gergely Sipos (MTA SZTAKI)12/02/2008, 16:00The input files of a node (job or service call) of a P-GRADE workflow can come from file systems, like SRM or SRB, or from database management systems via OGSA-DAI and the results can also be fed into any of these solutions. Both the file systems and the databases can be located in different production grids, and the jobs of the workflow can also be mapped to different grids. These grids can...Go to contribution page
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Mr Romain Reuillon (LIMOS)12/02/2008, 16:00Monte Carlo simulations are typical Grid applications, they are considered as naturally parallel because many replications of the same experiment can be distributed on multiple execution units to reduce the global simulation time. However, one needs to take care of the underlying random number streams and ensure that the generated streams do not show intra or inter-correlations. TestU01 is a...Go to contribution page
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Dr Maurice Bouwhuis (SARA)12/02/2008, 16:00Today's Life Scientists need to have advanced High Performance Computing facilities at their disposal. For that reason, and commissioned by the Dutch BioInformatics Centre (NBIC) and the Dutch grid infrastructure project (BiGGrid), SARA places, maintains and supports small but powerful computer clusters at the local sites of academic medical hospitals and universities. These clusters are...Go to contribution page
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Dr Torsten Antoni (GGUS, INSTITUT FüR WISSENSCHAFTLICHES RECHNEN, FORSCHUNGSZENTRUM KARLSRUHE)12/02/2008, 16:00The grid user support model in EGEE can be captioned "regional support with central coordination". This model is realised through a support process which is clearly defined and involves all the parties that are needed to run a project-wide support service. This process is sustained by a help desk system which consists of a central platform integrated with several satellite systems belonging to...Go to contribution page
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Julia Andreeva (CERN)12/02/2008, 16:00Functional magnetic resonance imaging (fMRI) is a popular tool used in neuroscience research to study brain function. The Virtual Lab for fMRI (VL-fMRI) is developed as one of the activities of the ``Medical Diagnosis and Imaging'' subprogram of the Virtual Laboratory for e-Sciences Project. VL-fMRI has taken steps to enable data management and analysis tasks for fMRI studies on the...Go to contribution page
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Dr Claudio Vuerli (INAF-OA Trieste)12/02/2008, 16:00The I/O of Astronomical Applications almost always involve one or more databases. Grids unable to directly access databases force users to access databases off-line and transfer data of interest in classical SEs before the execution of the applications. Similarly, output will be stored in classical SEs and transferred to a database off-line after the termination of the application. This way of...Go to contribution page
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Mr Ueng Wei-Long (ASGC)12/02/2008, 16:00GAP is developed with the following aspects. It is easy to use for not only the end-users but also the grid application developers. GAP provides higher level of Java API which maps the problem domain model to programming domain model. GAP is easy to evolve for adapting new IT technologies as well, and the accommodation is transparent to both developers and users. The GAP abstracts the...Go to contribution page
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David Manset (MAAT GKnowledge)12/02/2008, 16:00The HeC prototype is the result of 2 years of active R'nD,which has matured inside a private grid infrastructure. Amongst the 1st contributions, a security prototype was delivered as well as innovative domain specific client applications. Through a user-friendly singe sign-on, clinicians access resources independently of their geographical location and connectivity.It allows them to enter,...Go to contribution page
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Dr Karoly Jozsef Bosa (JKU/RISC)12/02/2008, 16:00In Globus Toolkit 4, we developed a parallel version of the simulation of the Hess-Lancaster test (typical medical examination). By this, we speeded up this simulation by a factor of 14-17. Furthermore, we reported the prototype implementation of a medical database component for "Grid-Enabled SEE++". Our next steps concentrate on developing a distributed grid-enabled database...Go to contribution page
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Dr Alessandro Di Girolamo (CERN IT), Dr Andrea Sciaba (CERN IT), Dr Elisa Lanciotti (CERN IT), Dr Enzo Miccio (CERN IT), Dr Harry Renshall (CERN IT), Dr Jamie Shiers (CERN IT), Dr Massimo Lamanna (CERN IT), Dr Nicolo Magini (CERN IT), Dr Patricia Mendez Lorenzo (CERN IT/GD), Dr Roberto Santinelli (CERN IT), Dr Simone Campana (CERN IT)12/02/2008, 16:00The LHC machine will produce some 15PB of data per year. The management and the analysis of these data relies on a worldwide production Grid service involving hundreds of sites from EGEE and collaborating Grids. One significant challenge remains: to demonstrate that these computing facilities can be used to satisfy simultaneously the needs of the 4 major experiments of the LHC at full 2008...Go to contribution page
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Dr Mariusz Sterzel (ACC CYFRONET AGH)12/02/2008, 16:00A huge amount of work has been devoted to satisfy chemical community requirements on the grid. The activity of CompChem, Gaussian and VOCE VOs has been mainly focussed on the grid ports of chemical software packages and on the development of grid tools that simplify job manipulation and workflows, automating complex data management tasks. The ports targeted commercial software packages like...Go to contribution page
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Cyril L'Orphelin (CNRS/IN2P3), Gilles Mathieu (CNRS/IN2P3), Helene Cordier (CNRS/IN2P3), Osman Aidel (CNRS/IN2P3)12/02/2008, 16:00The CIC portal added value to the Grid infrastructure is for all the EGEE actors, whether scientist, VO or site manager, or grid operator. Every type of group has its own entry point to the portal. The information on the operational state of the grid is filtered and presented according to the usefulness for a particular group. The tools presented to a given group are those which could be...Go to contribution page
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Mr Jean Salzemann (IN2P3/CNRS), Mr Vincent Bloch (IN2P3/CNRS)12/02/2008, 16:00The environment evolved throughout the development: It was first made of a set of scripts that generate the jobs, submit the files and check regularly their status while they are on the Grid. Through this abstract we want to present the new environement that is based on the AMGA metadata catalog for more flexibility and on a Java environment that can be used through web services. The...Go to contribution page
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Mr Florin Pop (University "Politehnica" of Bucharest), Prof. Valentin Cristea (University "Politehnica" of Bucharest)12/02/2008, 16:00Based on our contribution to the 2nd EGEE User Forum, we extend the DIOGENES (DIstributed Optimal GENEtic algorithm for grid application Scheduling) project that provides a solution to the Grid scheduling problem at application level. The extension consists of a new algorithm that aims to achieve a distributed, fault-tolerant, scalable and efficient method for dependable task (DAG) assignment...Go to contribution page
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Fairouz Malek (LPSC Laboratoire de Physique Subatomique et de Cosmologie (LPSC))13/02/2008, 09:00Scientific Results Obtained Using Grid Technology
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Dr Andrea Sciaba' (CERN)13/02/2008, 09:45
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Dr Harald Kornmayer (NEC Laboratories Europe)13/02/2008, 11:00The usage of a common and reliable tool eco system will help the developers from different domains to port their legacy applications to Grids. But not only developers will benefit from a general tool Eco System, but also Grid users and Grid resource operators can integrate their use cases in such a general Grid Tool Eco System. The g-Eclipse project built such an general, middleware...Go to contribution page
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Dr Lydia Maigne (CNRS/IN2P3, LPC Clermont-Ferrand)13/02/2008, 11:00The secured web portal has been designed to be used by physicians and medical physicists to perform Monte Carlo calculations : to optimize the acquisition and data processing protocols of medical scans, to ensure accurate treatment plannings for some specific radiotherapy applications. In that way, developments focus on the creation of a secured web platform to access grid computing...Go to contribution page
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Dr Pasquale Pagano (CNR-ISTI)13/02/2008, 11:00The framework allows to: i) store, update, validate, manipulate, and retrieve metadata through the Metadata Catalog; ii) arbitrarily transform metadata through the Metadata Broker; iii) index metadata through the XML Indexer and discover them through XQuery and XPath expressions; iv) manage annotations through the Annotation Management stack. The granularity of each operation varies from a...Go to contribution page
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13/02/2008, 11:00An overview of the of the workflow and parallelism session with information about how these themes fit into the User Forum programme and broad goals of the session.Go to contribution page
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Francesco Giacomini (Istituto Nazionale di Fisica Nucleare (INFN))13/02/2008, 11:10The WMS accepts requests concerning the execution of a computation, whose description is expressed in a flexible language, based on Condor ClassAds, as a set of key - value pairs. The WMS is then responsible to translate the logical description to concrete operations, in order to bring the execution of a job to a successful end. Several types of jobs are supported: simple, intra-cluster MPI,...Go to contribution page
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Mrs Ana Lucia Da Costa (CNRS-IN2P3, LPC Clermont-Ferrand)13/02/2008, 11:15The in silico workflow which we employed starts with docking to evaluate the binding energy between a target and a ligand, then selected compounds are refined by Molecular Dynamics (MD). In 2005, against Plasmepsin target, the WISDOM initiative achieved 41 million dockings, using FlexX, in 45 days on 1700 computers which is equivalent to 80 CPU years on one machine. The best 5000 compounds...Go to contribution page
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Mr Andre Gemuend (FhG/SCAI)13/02/2008, 11:20With the realisation of the GOME validation test suite we tested the capabilities of the three underlying data access services as well as their integration into the gLite middleware. For the validation process data from a satellite and data from ground measuring stations have to be assigned by their spatial coordinates. For this we used GIS features available in modern databases when...Go to contribution page
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Dr Andrew McNab (UNIVERSITY OF MANCHESTER)13/02/2008, 11:20CSRF and XSS attacks have been used against major public websites, such as Google's GMail, for several years, and generally involve "confused deputy" scenarios in which an authenticated user's web browser is deceived into carrying out an action desire by the attacker. Due to the support for Javascript functions such as XMLHttpRequest in browsers, it can be possible for an attacker's script to...Go to contribution page
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Mr Sunil Ahn (KISTI)13/02/2008, 11:35In the WISDOM environment, thousands of job agents distributed on the Grid may have access to an AMGA server simultaneously (1) to take docking tasks out of the AMGA server to execute on the machine that they are sitting, (2) to get the related ligand and target information, and (3) to store the docking results. The docking tasks take about 10 to 30 minutes to finish depending on the machine...Go to contribution page
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Cecile Germain-Renaud (Unknown)13/02/2008, 11:35Preliminary results indicate that EGEE job traffic shares some properties with the Internet traffic: the distributions of the inter-arrival times seem to be heavy-tailed and the time series of the loads indicate long-range power-law correlations. Precise characterizations are currently investigated on two aspects. a) Marginal distributions. Modeling the distributions at different spatial and...Go to contribution page
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Mr Ali Javadzadeh Boloori (Royal Institute of Technology (KTH))13/02/2008, 11:40The addition of a WS-DAIR interface to the gLite AMGA metadata service will greatly improve the extensibility and interoperability with other Data access services based on the Open Grid Service Architecture. As the standard also defines the interaction of relational database services among each other, it will allow to integrate data access services of different types. We will present as an...Go to contribution page
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Mr Julian Linford (ESA)13/02/2008, 11:40Large sets of ES data are available and distributed all over the world. The data come from satellites, ground-based network and sensors aboard balloons, aircrafts, and/or sounding rockets. A critical requirement is the organisation of the data, their accessibility and in some cases tools to define the workflow of the application. From a very large number of existing ES portals, a survey was...Go to contribution page
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Dr Gianluca Degliesposti (Università di Modena e Reggio Emilia)13/02/2008, 11:55After the docking screening of compounds contained in the ZINC database into the crystal structure, the docking results have been refined using molecular dynamics (MD) in order to validate and optimize the ligand orientation into the binding site of the target. Subsequently, the candidates have been rescored using more accurate scoring functions based on molecular mechanics Poisson Boltzman...Go to contribution page
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Dr Kerstin Ronneberger (DKRZ)13/02/2008, 12:00The system is built modular and service oriented to be expandable and easily maintainable. All Xml metadata instances, as well as the service layer composed of XSL stylesheets, XQuery/XUpdate modules and XML templates and property files are stored in a native XML database (eXist) and are accessible via different interfaces, depending on the interest in the metadata. For users of the data,...Go to contribution page
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Federica Fanzago (CERN-CNAF)13/02/2008, 12:00The CMS experiment will produce few PBytes of data each year to distribute and store in many computing centres spread in the countries participating to the CMS collaboration and made available for analysis to world-wide distributed physicists.CMS will use a distributed architecture based on Grid infrastructure to analyze data stored at remote sites, to assure data access only to authorized...Go to contribution page
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Jeremy Coles (University of Cambridge)13/02/2008, 12:00The LHCb experiment, designed for high-precision studies of matter-antimatter asymmetries in the decays of b-hadrons, is one of the four main experiments at the CERN Large Hardon Collider (LHC). DIRAC has been developed to meet the experiment’s need for processing petabytes of data per year, using globally distributed resources. It can be used either as a standalone Grid implementation, or...Go to contribution page
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Mrs Sorina CAMARASU (CNRS - CREATIS LRMN)13/02/2008, 12:15Our main requirements concern computing resources and data management. The simulation is split into sub-jobs. Each sub-job uses a different random seed number, allowing to be statistically independent and to be run concurrently. By dividing one simulation into hundreds of different sub-jobs, computation time can be reduced from more than one day to less than 1 hour if computing resources on...Go to contribution page
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Dr Jesus Marco de Lucas (Instituto de Fisica de Cantabria CSIC)13/02/2008, 14:00The Interactive European Grid project (int.eu.grid) aims to deploy and operate a production quality Grid infrastructure oriented to service research communities with specific needs regarding parallel MPI support and interactive access to grid resources. Over the past user forums (Geneva 2006, Manchester 2007) it has been observed that there is a clear need and interest in the scientific...Go to contribution page
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Dr Jens Jensen (STFC-RAL)13/02/2008, 14:00SRM and SRB are traditionally the two "islands" in Grid data, achieving interoperability only amongst themselves. We now show data being transferred between SRMs and SRBs, effectively making SRBs available (with some restrictions) as a Storage Element to gLite-based Grids. The main use case is to enable data sharing between such Grids - files are copied from one to the other and can be...Go to contribution page
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Mr Kostas Georgakopoulos (University of Macedonia)13/02/2008, 14:00We are researching and evaluating systems that can provide a bridge to non-dedicated resources for the grid. We focused on the Condor system because it is a technology that has been around for many years. Furthermore, computing elements (CE) that use the LCG or gLite middleware can be configured to interact with Condor pools and forward jobs to be executed. Our aim was to test the...Go to contribution page
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Dr Maximilian Berger (University of Innsbruck)13/02/2008, 14:00In real production grids the time between submitting a grid activity and its execution ranges from 10 to 60 minutes. When porting a complex workflow to the Grid, such as Wien2K, this overhead does not only appear once, but repeatedly, and increases the execution time of workflows largely. In our previous presentation we showed aggregation of grid activities. Since then we have also...Go to contribution page
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Ms Mei Kuan Lim (Mimos Berhad), Dr Yee Jiun Yap (Mimos Berhad)13/02/2008, 14:20The proposed system is intended to be implemented in the KnowledgeGRID Malaysia to improve the efficiency of the scheduling system. The work is focused on imperative paradigm tasks since they are commonly used in the aforementioned grid. Imperative paradigm refers to a sequence of commands for the computer to perform and the normally used imperative paradigm programming languages are R!,...Go to contribution page
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Dr Pasquale Pagano (CNR-ISTI), Mr Pedro Andrade (CERN)13/02/2008, 14:20gCube reflects within its name a three-sided interpretation of the Grid vision of resource sharing: sharing of computational resources, sharing of structured data, and sharing of application services. As such, gCube embodies the defining characteristics of computational grids, data grids, and virtual data grids. Precisely, it builds on gLite middleware for managing distributed computations and...Go to contribution page
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Hakon Tuvin Sagehaug (Unknown), Valerio Venturi (Unknown)13/02/2008, 14:20Authorisation is an important component of the Grid security infrastructure. AuthZ decision is typically based on the AuthZ policy that contains a set of access control rules depending on user credentials or attributes. In many cases AuthZ service is a part of the application platform and uses a policy specific to application. Consistency of the access control enforcement can be achieved by...Go to contribution page
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Dr Marcin Lawenda (Poznan Supercomputing and Networking Center)13/02/2008, 14:20The analysis of the wide implied RIS aspects are under of interest of the RINGrid (Remote Instrumentation in Next-generation Grids) project. This activity is part of 6th European Framework Programme and has been launched in October 2006. Briefly, the RINGrid project will provide systematically identification of instruments and corresponding user communities, the definition of their...Go to contribution page
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Dr Andrea Santoro (ENEA FIM, 00044 Frascati, Roma, Italy)13/02/2008, 14:40The success of the GRID depends also on its flexibility in accommodating the computational resources available over the network. A big effort is underway to develop accepted GRID standards but in the meanwhile solutions have to be found to include into EGEE infrastructure resources based on platforms or operating systems which are not currently supported by gLite middle-ware. SPAGO concept has...Go to contribution page
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Mr Branislav Simo (Institute of Informatics, Slovak Acedmy of Sciences)13/02/2008, 14:40Grid computing is a useful tool for complex scientific applications, enabling their execution over a large pool of resources. Many of the deployed applications are a complex workflow composed of many smaller parts. However, most of these applications appear to their users as a monolithic black box, usually driven by a complicated and finely tuned shell script. Once the job starts executing,...Go to contribution page
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Mr Fu-Ming Tsai (Academia Sinica Grid Computing)13/02/2008, 14:40The standard SRM services for SRB were developed to make the popular SRB data grid system interoperable with the gLite e-infrastructure. AMGA is used to implement the File catalog and to provide uniform interface for replication and to the backend database. Currently the development is under standard SRM functional testing and validation, and establishment of full SRM 2.2 functionalities will...Go to contribution page
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Dr Yvon Jégou (INRIA)13/02/2008, 14:40While much has been done to build Grid middleware on top of existing operating systems, little has been done to extend the underlying operating systems for enabling and facilitating Grid computing, for example by embedding important functionalities directly into the operating system. XtreemOS project aims at investigating and proposing new services that should be added to current operating...Go to contribution page
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Dr Meyer Norbert (PSNC)13/02/2008, 15:00The DORII project aims to deploy e-Infrastructure for new scientific communities, where the ICT technology is still not present at the appropriate level. The DORII is focusing on the following selected scientific areas: earthquake community, with various sensor networks, environmental science community, experimental science community, with synchrotron and free electron lasers. Working closely...Go to contribution page
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Mr Boro Jakimovski (University of Sts. Cyril and Methodius)13/02/2008, 15:00The application is implemented as a Java framework for executing genetic algorithms in a distributed fashion using a Grid. The framework consists of two parts: genetic algorithm framework and grid tools. The first part enables researchers to easily implement new optimization problems by simply extending several classes. The second part enables researchers to make their application Grid-aware....Go to contribution page
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Dr Giacinto Donvito (INFN-Bari)13/02/2008, 15:00A way to access widespread databases within a computational grid environment, through a set of secure, interoperable and efficient data grid services is very common in eScience projects. Use cases in the bioinformatics and astrophysical communities span from very simple queries up to really stressing ones. A stress tests has been set up exploiting the EGEE grid infrastructure by submitting...Go to contribution page
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Dr Steve Fisher (RAL)13/02/2008, 15:00The API returns a list of service descriptors matching search criteria. A random choice can then be made from the URLs returned. Information about the individual services can be obtained from the descriptors if it is desired to rank the services returned or produce a web page of some subset of services. The search criteria are specified by means of three filters – service, VO and data. The...Go to contribution page
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Dr Johan Montagnat (CNRS)13/02/2008, 16:00Hospitals continuously produce tremendous amounts of image data that is managed by local PACS (Picture Archiving and Communication Systems). These systems are often limited to a local network access although the community experiences a growing interest for data sharing and remote processing. Indeed, patient data is often spread out different medical data acquisition centers. Furthermore,...Go to contribution page
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Dr Mariusz Sterzel (CERN)13/02/2008, 16:00The current state of development of grid middleware allows easy parallel execution in case of software using any of MPI flavour. Unfortunately many chemical packages do not use MPI for parallelization therefore special treatment is needed. Gaussian can be executed in parallel on SMP architecture or via Linda. These require reservation of certain number of processors/cores on a given WN and the...Go to contribution page
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Dr Sergio Andreozzi (INFN-CNAF)13/02/2008, 16:00The current gLite middleware relies on the GLUE 1.3 information model and its implementation in LDAP in order to advertise the available resources and their characteristics in the EGEE infrastructure. In the context of the Open Grid Forum, the GLUE Working Group is defining the evolution of this information model to improve the current design and to unify a number of existing approaches in a...Go to contribution page
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Mr Carlos Aguado Sanchez (CERN)13/02/2008, 16:20Interoperability and compliance to standards are important quality attributes of software developed for Grid environments where many different parts of an interconnected system have to interact. Compliance to standard is one of the major factors in making sure that interoperating parts of a distributed system can actually interconnect and exchange information. Taking the case of the Grid...Go to contribution page
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Mr Mario Lassnig (CERN & University of Innsbruck, Austria)13/02/2008, 16:25DQ2 is specifically designed to support the access and management of large scientific datasets produced by the ATLAS experiment using heterogeneous grid infrastructures. The DQ2 middleware manages those datasets with global services, local site services and enduser interfaces. The global services, or central catalogues, are responsible for the mapping of individual files onto DQ2 datasets. The...Go to contribution page
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Mr Kiril Dichev (High Performance Computing Center Stuttgart)13/02/2008, 16:30MPI-Start was developed for the Interactive European Grid project in order to improve MPI support for its infrastructure. MPI-Start supports different MPI implementations (currently Open MPI, MPICH, MPICH2, LAM-MPI). Also, it offers support to different batch systems (currently PBS, SGE, LSF). In addition, support for MPI tools like Marmot is already integrated into MPI-Start. PACX-MPI...Go to contribution page
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Per Öster (CDC)13/02/2008, 16:40The objectives of PRACE are to: • Create and implement by 2009/2010, a persistent, sustainable pan-European HPC service with several HPC leadership systems of petaflop/s performance. • Define and establish a legal and organizational structure involving HPC centers, national funding agencies, and scientific user communities. • Prepare for the deployment of petaflop/s systems in 2009/2010...Go to contribution page
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Dr Antonio Calanducci (INFN Catania)13/02/2008, 16:50A gLibrary/DRI repository is made of large digital content (as image files, video, etc) and metadata associated with it (annotations, descriptions, etc). In a typical scenario, new repository providers could use the built in mechanisms to store repository items (e.g. studies made of textual data and multiple medical images) in a combined GRID and federated RDBMS by simply describing the...Go to contribution page
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fabio bellavia (Univ. Palermo)13/02/2008, 17:00Because most-wanted of image analysis applications as three-dimensional reconstruction, mosaicing, object recognition and classification can rely on feature detection methodology as a primary stage, it can be used to satisfy many requests of these items and more in general in the field of computer vision. Feature descriptors can be applied to identify similar regions on different images; it is...Go to contribution page
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Mr Xiaoyu Chen (Brunel University)13/02/2008, 17:00The project originated from providing a RUS compliant solution for WLCG accounting, which requires collection of usage data from three operational Grids, the Open Science Grid (OSG), EGEE and NorduGrid. The collection of usage data are to be stored centrally and summarized for usage reporting on per site, per VO, per month basis. These collected usage data are persistent in relational...Go to contribution page
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Dr Francisco Casatejón (CIEMAT)14/02/2008, 09:00
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Dr Mariusz Sterzel (ACC CYFRONET AGH)14/02/2008, 09:10
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Dr Monique Petitdidier (IPSL)14/02/2008, 09:20
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Sy Wayne Holsinger (Trust-IT Services Ltd.)14/02/2008, 09:30
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Dr Claudio Vuerli (INAF-OA Trieste)14/02/2008, 09:40
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Dr Johan Montagnat (CNRS)14/02/2008, 09:50
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Dr VINCENT BRETON (IN2P3-LPC)14/02/2008, 10:00
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Mr Frederic Schaer (CEA)14/02/2008, 10:15
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Dr Pasquale Pagano (CNR-ISTI), Dr Patricia Mendez Lorenzo (CERN IT/GD)14/02/2008, 11:00
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Dr Harald Kornmayer (NEC Laboratories Europe)14/02/2008, 11:15
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Claudio Grandi (INFN & CERN)14/02/2008, 11:30
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Cal Loomis (CNRS/LAL)14/02/2008, 11:45
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Evangelos Floros (Unknown)14/02/2008, 12:00
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Dr Bob Jones (CERN)14/02/2008, 12:15
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